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Detailed information on CNT30417231


BLAST search results

BLAST vs Swiss-Prot:
sp|P08222|CB22_CUCSA, E-value = 2e-79

BLAST vs NONCODE:
NONMTRT001605, E-value = 2e-46

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315988Papaver somniferumCorylus avellana35.0862.1483.52261forward
CNT30373848Papaver somniferumArabidopsis thaliana47.853483.15356forward
CNT30269348Papaver somniferumChenopodium quinoa30.9149.6884.35230forward
CNT30380492Papaver somniferumManihot esculenta28.2328.6983.81210forward
CNT30629553Papaver somniferumVigna unguiculata47.7244.6582.25355forward
CNT30200456Papaver somniferumPisum sativum23.6644.3388.07176forward
CNT30123772Papaver somniferumPhyscomitrium patens23.6641.1285.8176forward
CNT30544802Papaver somniferumBrassica napus47.8552.282.3356forward
CNT30234343Papaver somniferumBrassica oleracea37.7728.3684.34281forward
CNT30171059Papaver somniferumTrifolium pratense37.146.9481.88276forward
CNT30145117Papaver somniferumMedicago truncatula48.6639.3584.25362forward
CNT30310534Papaver somniferumCamelina sativa47.8530.0783.43356forward
CNT3060679Papaver somniferumArabidopsis lyrata34.2742.583.92255forward
CNT3079822Papaver somniferumBrassica juncea48.6637.3682.87362forward
CNT30611387Papaver somniferumArabis alpina25.1368.2583.96187forward
CNT30572261Papaver somniferumVitis vinifera23.3921.2786.21174forward

Expression of CNT30417231

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MYIQTHVKQFSKMQIQRLTRSFHLITDESDHLPGAKLVA*

>peptide 2 (36 aa)
MNQIICREQSWWRSSRRCWRLDQLSGQPSFPKDPFR*

>peptide 3 (31 aa)
MGRSFHLGKVGQQSHPMVLLQLCNLQLLPSR*

>peptide 4 (35 aa)
MENIANLPFLISFTFNSAKASGSSAKPNGSKLPPG*

Sequence

>CNT30417231
GATTTGCTCAAAACCCTGTGAGGTGTTAATTTTTTGTTTTGGATGTACGATGATAAATGACAACATTATACTTTTTGATTAATTGATTGAAATAGGCACA
AACTTCATAAACTTAATTAAAATGTACATACAAACGCACGTCAAACAATTCTCCAAAATGCAAATTCAAAGACTAACACGTTCATTCCATCTGATTACCG
ATGAATCAGATCATTTGCCGGGAGCAAAGTTGGTGGCGTAGTTCCAGGCGTTGTTGGCGACTGGATCAGCTAAGTGGTCAGCCAAGTTTTCCAAAGGACC
CTTTCCGGTGACGATTGCTTGAACAAAGAATCCAAACATGGAGAACATAGCCAATCTCCCGTTCTTGATCTCCTTCACCTTCAATTCAGCGAAAGCTTCT
GGGTCATCAGCTAAGCCTAATGGGTCGAAGCTTCCACCTGGGTAAAGTGGGTCAACAATCTCACCCAATGGTCCTCCTGCAACTCTGTAACCTTCAACTG
CTCCCATCAAGATAACTTGTGTTGCCCAAATGGCAAGGATGCTCTGAGCATGAACCAAACTTGGGTTACCCAAGTAGTCTCTGGATCAGCAGATAGCCCA
GCAGTGTCCCATCCGTAATCACCGGCGAATTCACCAGTCAAGTATGATGGAGCTTCACCAGAGAATGGTCCCAAGTACTTAACACGGTCAGGACCGTACC
ATGGGCTGGATGAGACGGTTTTTGGCTTTGCAGTGGTTTTTCTC