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Detailed information on CNT30269346


BLAST search results

BLAST vs Swiss-Prot:
sp|P27495|CB24_TOBAC, E-value = 2e-112

BLAST vs NONCODE:
NONSTUT001352, E-value = 6e-47

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315809Chenopodium quinoaCorylus avellana44.5454.8283.86347forward
CNT30380511Chenopodium quinoaManihot esculenta45.195084.94352forward
CNT30404032Chenopodium quinoaBeta vulgaris67.1450.2485.47523forward
CNT30709832Chenopodium quinoaGlycine max71.6361.3981.18558forward
CNT30539881Chenopodium quinoaBrassica napus25.0325.4988.21195forward
CNT30237238Chenopodium quinoaBrassica oleracea52.7646.0283.21411forward
CNT30173253Chenopodium quinoaTrifolium pratense31.5828.9184.96246forward
CNT30310534Chenopodium quinoaCamelina sativa24.2615.9687.83189forward
CNT3078263Chenopodium quinoaBrassica juncea25.0325.0687.18195forward
CNT30263105Chenopodium quinoaBrassica rapa58.4139.9182.64455forward
CNT30611387Chenopodium quinoaArabis alpina24.970.886.6194forward
CNT30572261Chenopodium quinoaVitis vinifera25.9324.6986.14202forward
CNT3055205Chenopodium quinoaAmborella trichopoda71.2562.7881.98555forward

Expression of CNT30269346

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAHLQWITSSSRFLAKVSGSADRPAVSQP*

>peptide 2 (41 aa)
MVILPPPRMFNSEAELCLIACPAKEGEERAIVEEAIVKRAS*

>peptide 3 (71 aa)
LHLPGTKLVAYDQALLLTGSARWSARFSNGPFPVTIAWTKNPNIENIANLPFLISLTFNSAKASGSSAKPK*

Sequence

>CNT30269346
ACTTCACTTGCCGGGAACGAAGTTGGTGGCGTATGACCAAGCATTGTTGTTAACTGGGTCGGCAAGGTGGTCAGCAAGGTTCTCCAATGGGCCCTTTCCG
GTAACAATAGCTTGGACAAAGAATCCAAACATAGAGAACATAGCCAACCTACCGTTCTTAATCTCCTTAACCTTCAACTCGGCGAAGGCCTCTGGGTCAT
CAGCCAAGCCCAAATAGCCAAAATACTTTGGGCATGGATCAAACTTGGGTTACCCAAGTAGTCAAGCCCACCCTCACTAAAGATTTGTGACCCAGCCTTG
AACCAAACGGCCTCGCCGAACTTAACACCATTACGGGCCAATAGCTCGGGGAAAACACAGCCCAATGCACCCAACATGGCCCATCTGCAGTGGATCACCT
CAAGCTCACGGTTCTTAGCAAAGGTCTCTGGGTCAGCGGATAGGCCCGCTGTGTCCCAACCATAGTCACCAGGAAATTCACCAGTGAGGTATGATGGGGC
CTCACCTGAGAATGGGCCCAAATACTTAACACGGTCTGGGCCGTACCATGGGCTTCCTGATGATACATTTTTGGGCTTTGCTGCAGCTTTCCTCATGGTG
ATCCTTCCCCCACCTAGGATGTTTAATTCAGAGGCGGAGCTATGTTTAATTGCCTGTCCGGCCAAAGAAGGGGAAGAAAGAGCCATTGTTGAGGAGGCCA
TTGTTAAGAGGGCAAGCTAAGAACTCTAAAAAAAATTATGTAACAAGAATTTTTTTTTATTTTTTTTTTTATGTTTGTT