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Detailed information on CNT30355896


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 6e-69

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30235237Lactuca sativaBrassica oleracea40.4842.8884.45238forward
CNT3062296Lactuca sativaArabidopsis lyrata24.4930.9788.19144forward
CNT30572261Lactuca sativaVitis vinifera40.4829.186.55238forward
CNT30645477Lactuca sativaCannabis sativa31.9749.3485.11188forward

Expression of CNT30355896

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MDFLMVQPSLQMWFSSLKPARFLKARIQRELFSLLVRRKGRREPWWKQPLNLFSDQKVRMLRKVVV

>peptide 2 (35 aa)
MENIASLPFLISFTFNSAKASGSSASPNGSKLPPG*

Sequence

>CNT30355896
TGCCCACTAAAACCATATATTAATTAATTAATTTACATAAAAATTTCATTACATTCACTTTCCGGGTACAAAGTTTGTGGCATAAGACCAAGCATTGTTG
GCAACGGGATCAGCAAGGTGGTCAGCAAGGTTCTCCAATGGTCCCTTTCCTGTAACAATGGCTTGAACAAAGAAGCCAAACATGGAGAACATAGCAAGTC
TTCCATTCTTGATCTCCTTCACCTTCAACTCAGCAAAAGCCTCTGGATCATCAGCAAGCCCTAACGGGTCAAAGCTACCACCAGGGTAAAGCGGGTCAAC
AACCTCACCCAAGGGTCCACCTGCAATTCTGTAACCTTCAACCGCACCCATCAAGATCACTTGGGTACTTGACTCGGTCGGGTCCGTACCATGGACTTCC
TGATGGTGCAACCTTCTTTGCAGATGTGGTTTTCCTCATTGAAACCCGCCCGTTTCCTAAAAGCTCGGATCCAGAGGGAGCTGTTTTCACTGCTTGTCCG
GCGAAAGGGGAGGAGAGAGCCATGGTGGAAGCAGCCATTGAATTTGTTCTCAGATCAGAAGGTAAGAATGTTGAGAAAAGTGGTGGTC