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Detailed information on CNT30610069


BLAST search results

BLAST vs Swiss-Prot:
sp|P08222|CB22_CUCSA, E-value = 2e-60

BLAST vs NONCODE:
NONMTRT001605, E-value = 4e-50

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30548768Gossypium raimondiiIpomoea triloba56.0166.5887.85247forward
CNT30513343Gossypium raimondiiJuglans regia45.1233.0688.94199forward
CNT30380492Gossypium raimondiiManihot esculenta60.5436.4888.01267forward
CNT30629403Gossypium raimondiiVigna unguiculata48.5329.7290.19214forward
CNT30200456Gossypium raimondiiPisum sativum50.1155.6784.62221forward
CNT30538978Gossypium raimondiiBrassica napus53.2922.5585.11235forward
CNT30234693Gossypium raimondiiBrassica oleracea44.4444.8588.27196forward
CNT3078263Gossypium raimondiiBrassica juncea53.0630.0885.9234forward
CNT30572261Gossypium raimondiiVitis vinifera53.2928.7385.96235forward
CNT3055166Gossypium raimondiiAmborella trichopoda61.2233.3385.93270forward
CNT30176337Gossypium raimondiiVigna angularis58.525.4489.92258forward

Expression of CNT30610069

Peptides detected in this lncRNA

>peptide 1 (44 aa)
SSLSGDKVGGIGPSIVVDWVSKVVSQVLQWSLSGHDGLNEEPEH*

>peptide 2 (57 aa)
MPLGHQQDPMGQSYHLGTMGQSLHRVVHRLGGFPHGNTASSPDFRGGRGELHCLTGE*

>peptide 3 (46 aa)
METRPVPRISGVEGENFTALPANDGEERAMVVEAIVKQLILLVMCE*

Sequence

>CNT30610069
TAAGTTCACTTTCCGGGGACAAAGTTGGTGGCATAGGCCCAAGCATTGTTGTTGACTGGGTCAGCAAGGTGGTCAGCCAAGTTCTCCAATGGTCCCTTTC
CGGTCACGATGGCCTGAACGAAGAACCCGAACATTGAGAACATAGCCAACCTACCGTTCTTGATCTCTTTCACCTTGAGCTCAGCGAATGCCTCTGGGTC
ATCAGCAAGACCCAATGGGTCAAAGCTACCACCTGGGTACAATGGGTCAGTCACTTCACCGAGTGGTCCACCGGCTTGGTGGTTTTCCTCATGGAAACAC
GGCCAGTTCCCCGGATTTCAGGGGTGGAAGGGGAGAACTTCACTGCCTTACCGGCGAATGATGGGGAAGAAAGAGCCATGGTAGTAGAGGCCATTGTGAA
GCAATTGATTTTGTTGGTGATGTGTGAGTGATTGAATGAGG