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Detailed information on CNT30728131


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 1e-15

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30628941Corchorus capsularisVigna unguiculata21.6421.2585.34116forward
CNT30488696Corchorus capsularisOlea europaea33.9631.7182.97182forward
CNT30565212Corchorus capsularisActinidia chinensis21.6414.0983.62116forward
CNT30650923Corchorus capsularisRosa chinensis33.9623.780.77182forward
CNT3029382Corchorus capsularisTheobroma cacao87.8782.4987.26471forward
CNT30120386Corchorus capsularisCitrus clementina33.5827.4486.67180forward

Expression of CNT30728131

Peptides detected in this lncRNA

>peptide 1 (30 aa)
PIMLLLASDGFDAGEIKLVVSFFASRFIND*

>peptide 2 (41 aa)
MDSMLEKSNLLCPSLPLVSSMIDKIQQVQELCELYHHCQPL*

Sequence

>CNT30728131
CTCCAATCATGTTGCTCCTAGCATCTGATGGATTCGATGCTGGAGAAATCAAACTTGTTGTGTCCTTCTTTGCCTCTCGTTTCATCAATGATTGATAAAA
TTCAACAAGTTCAGGAGCTCTGTGAACTTTATCACCACTGCCAGCCCCTCTAGGTAGGCTTCCTGGAGGAGGAGGCGGAGGTGGAGGGGCACCGGGTATT
GGAGGCGGAGCTGGAGGTTTTCCAGTTGTAGCGGTATTAGCACCAGCAGAGTTGCCACTTGCTGGCTTAGGTGGTGGCCTAGGCACCCTAGGTGGTCTCT
TTTCAATGTGTGCGAGTTTCATCTTGCTTATCATTTGAGAATCTACAGCCTTATCATCGCCGGATTGCTCACTTGAGTCACCAGGATTAACCGTCCTTTC
CTTTATTTGAGCAAGTCTTGGTGGTAACATTACAGATTTCTCTCTGTCTGCCTTTGTTCTGGACTCAAAGTTAGAATTGAAATTTGACTTGTCGCCAAAC
CTCTCTGCCCTTGCTTGCTCTGCTCTTTTTTTAATA