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Detailed information on CNT30375029


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 3e-105

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30565212Arabidopsis thalianaActinidia chinensis20.1716.8982.01139forward

Expression of CNT30375029

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MCFSLSTANLCLSLYAGYFSSKTLSTDLDITWNDAATEF

>peptide 2 (44 aa)
TAKRNVDRFSISPIILFLAAEELPVPEEIKEGAPSFFDSRFIND*

>peptide 3 (40 aa)
MLNVLLSFNCQLMPVFVRRILLIQNIVNRFRHHVERCCNGI

>peptide 4 (57 aa)
MIDKTQQAQELGELCSRLPLLFQVLQEEVVVEVVHRQVVEEVVVDHHQVKEVLLKAS*

Sequence

>CNT30375029
TTACTGCTAAGAGGAATGTTGATCGGTTCTCGATTTCCCCAATCATATTGTTCCTAGCTGCTGAAGAATTACCAGTTCCTGAAGAGATCAAAGAAGGTGC
ACCTTCTTTCTTCGATTCACGTTTCATCAATGATTGATAAAACTCAACAAGCTCAGGAGCTCGGTGAACTTTGTTCCCGCCTCCCGCTCCTCTTCCAAGT
GCTCCAGGAGGAGGTGGTGGTGGAGGTGGTCCACCGCCAGGTGGTGGAGGAGGTGGTGGTGGACCACCACCAGGTAAAGGAGGTCTTGCTGAAGGCAAGT
TAGTACTTTTACCACCTCCAGCTGATCTTGGAGGCGGGCGAGGTACTCTAGGAGGTCGTTTCTCAATGTCTACAAGCTTCATTTTGGTTACGGTTGCAGC
GTTTTCGCTGGCTTTACCTTCGTTAGATTCATTTGACTCGTTAGACTGATCACCTGTGGCTGTGATCACAGAGGGAACAACAACCCTTTTCTCCTTTAGT
TGAGCAAGTTTAGGAGGCAAAGCCACATTACCGCCAAATCTCTCTGCTCTTGCTTGATCTGCTTTATGCTTAATGTGCTTCTCTCTTTCAACTGCCAACT
TATGCCTGTCTTTGTACGCAGGATACTTCTCATCCAAAACATTGTCAACCGATTTAGACATCACGTGGAACGATGCTGCAACGGAATTC