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Detailed information on CNT30416557


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 7e-31

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30565212Papaver somniferumActinidia chinensis23.0314.9585.37123forward
CNT30113624Papaver somniferumFicus carica20.614.0585.45110forward

Expression of CNT30416557

Peptides detected in this lncRNA

>peptide 1 (30 aa)
PIILLRALAVFDVEEVTNVVSFFASRFIKL*

>peptide 2 (42 aa)
MWYPSSPHVSLNSDRIPLARELGELYHQSLALLTNFQVEVAA*

Sequence

>CNT30416557
CCCCGATCATATTGCTCCGAGCACTGGCTGTATTTGATGTTGAAGAAGTAACTAATGTGGTATCCTTCTTCGCCTCACGTTTCATTAAACTCTGATAGAA
TTCCACTAGCTCGGGAGCTCGGTGAACTTTATCACCAGTCCCTGGCCCTTTTGACAAACTTCCAGGTGGAGGTGGCGGCCTAGGCACCCTTGGAGGCCTT
TTTTCAATATCGGCATACTTTATCTTGCTCACCACTTGGGATGCAACTTCGGTAGCATCATTATTTGTTTGCTCACCTGAACCACCAGTTACAACGACTT
TCTCCTTTATTTTGGCAAGTTTCGGCGGCAAGATTGCAGGCTTCCTATCACCCACCTTTCCTTGTGAATCTGAGCTTGAATAAACACCAGTGAATCTTTC
TGTTCTTGCTTGCTCGGCTTTCTCCTTGATTGCCTTCTCCCTCTCTAACGCCAACTTGTGTCGATCCTTATAAGCAGGGTACTTTTCATCTATAACCCCA
TCAACTGATTTAGACATCAATTGGAATGATTCAG