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Detailed information on CNT30381636


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 2e-44

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30698380Manihot esculentaQuercus lobata12.1820.5190.1281forward
CNT3043744Manihot esculentaPrunus dulcis12.1820.6690.1281forward
CNT30565212Manihot esculentaActinidia chinensis24.9620.1782.53166forward
CNT30650923Manihot esculentaRosa chinensis2017.3281.95133forward
CNT30120296Manihot esculentaCitrus clementina18.821.7484125forward

Expression of CNT30381636

Peptides detected in this lncRNA

>peptide 1 (59 aa)
PRVSLMSDRIQLAQELCELYHHFLPLLASFQVEEVDVVVHQEVGVGVAGHLAEEVAEAP*

Sequence

>CNT30381636
TGCCTCGCGTTTCATTAATGTCTGATAGAATTCAACTAGCTCAGGAGCTCTGTGAACTTTATCACCACTTCCTGCCCCTCTTGGCAAGCTTCCAGGTGGA
GGAGGTGGACGTGGTGGTCCACCAGGAGGTGGGGGTGGGGGTGGCGGGGCACCTGGCAGAGGAGGTGGCCGAGGCACCCTAGGAGGCCTCTTCTCAATGT
CAGCAAGTCTCATCTTGCTTATTGATTGAGAATCAACAGCTTTGCCGTCATTAGATTGGCCAGCAGAAGCAATTGATTTCTCTTTTATTTGAGAAAGTTG
TGATGGCAGACTTGCAGATTTCACTCTCCCCCCCTTTGACATAGAATCAAAACTTGAATTCTCAGCAAATCTTGCTGCTCTTGCTTGCTCTGCCTTTTCT
TTTATCTGCTTCTCCCTCTCTAGGGCCAATTTATGCCGGTCTTTATAGACTGGATATTTTTCATCAAGAACTCCTTCAACTGATTTGGACATTAATTGGA
AAGATGAAGCAACATTATTTAGCGAGTCACCAGAAGAAACTTGTGTTCTAATATGGGGAACATTTGAAGGAGTTTCTGGAGAGTCGGGAATATCTTGTTC
CATCTTGCCGAATGTAGTTATGGCTACACTATCACCAGCGTTTCTCAACATTAAAGCTTCCAATG