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Detailed information on CNT3093554


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 3e-21

BLAST vs NONCODE:
NONSLYT001540, E-value = 3e-112

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30488674Solanum tuberosumOlea europaea41.2227.4385.16155forward
CNT30565212Solanum tuberosumActinidia chinensis22.3410.2184.5284forward

Expression of CNT3093554

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MMCLSLTRVSSMIGRIQLIQEHDEPCHLQLLLSLKIQEEVVV*

>peptide 2 (39 aa)
VDLFSISPIMLFLASDVFEVAVIKADDVSFFDSRFINDW*

Sequence

>CNT3093554
TGTGGATCTGTTCTCTATCTCCCCGATCATGTTGTTTCTTGCATCTGATGTGTTTGAAGTAGCAGTTATCAAAGCTGATGATGTGTCTTTCTTTGACTCG
CGTTTCATCAATGATTGGTAGAATTCAACTAATTCAGGAGCACGATGAACCTTGTCACCTCCAGCTCCTCCTTTCATTAAAGATCCAGGAGGAGGTGGTG
GTCTAGGAGGTCCTCCGCCAGGTGGAGGAGGCGGTGGGGGTGGACCTCCAGGTGCTCCACCTGTAACAGTATTACCAGCTGGAGCTGGACCACCTCCTGA
TCGTTTAGGAGGTGGACGAGGAGTCCTGGTAGGTCTTTTCTCAATATTAACAAGTTTCATTTTGCTCACGGCTTGA