Detailed information on CNT30180672


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521677Secale cerealeSetaria italica28.8127.8988.5770forward
CNT30387265Secale cerealeTriticum turgidum65.0228.0194.3158forward
CNT30242255Secale cerealeAvena sativa30.4512.1394.5974forward
CNT30313622Secale cerealeCamelina sativa21.48.4690.3852forward
CNT30132420Secale cerealeLolium perenne34.1613.4393.9883forward
CNT30680603Secale cerealeTriticum urartu65.0234.294.3158forward
CNT30349047Secale cerealeEragrostis tef21.49.2288.4652forward
CNT30583123Secale cerealeEchinochloa crusgalli29.6314.7888.8972forward
CNT30557390Secale cerealePanicum hallii33.3311.9190.1281forward

Expression of CNT30180672

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MHALDRSLHVRCIPEEITLSSPVGRLLAKEEADLGEELLRGTVVGDGLLGGGV

Sequence

>CNT30180672
TTAATCATTGTGCACGCATGAATCCTTGAGGGAAATCGACCTCTTAGTTCATCCATCCTCATGTACAAATCAAAGAAACACACATGCATGCCCTCGATCG
GTCTCTACACGTACGGTGCATCCCTGAGGAAATTACATTAAGTTCGCCGGTCGGTCGACTGCTGGCCAAGGAGGAAGCCGACCTGGGAGAGGAACTCCTC
AGGGGAACCGTAGTCGGTGATGGTCTTCTTGGTGGTGGGGTTG