Detailed information on CNT30242255


BLAST search results

BLAST vs Swiss-Prot:
sp|O49344|PSBP2_ARATH, E-value = 4e-37

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521677Avena sativaSetaria italica39.1895.2287.03239forward
CNT30180672Avena sativaSecale cereale12.1330.4594.5974forward
CNT30554351Avena sativaOryza glaberrima36.0732.8890220forward
CNT30132332Avena sativaLolium perenne101.4855.7792.89619forward
CNT30680245Avena sativaTriticum urartu35.947.195.43219forward
CNT30583062Avena sativaEchinochloa crusgalli77.5460.8885.62473forward
CNT30557390Avena sativaPanicum hallii81.4873.0985.71497forward

Expression of CNT30242255

Peptides detected in this lncRNA

>peptide 1 (32 aa)
LVFIHSSCTIKETHTCTCPLLHVRCIPDPEQI*

>peptide 2 (33 aa)
SCSSIPHVQSKKHTHAHALFYTYGASPTPSKFD*

>peptide 3 (45 aa)
RVHPFLMYNQRNTHMHMPSSTRTVHPRPRANLIKFPDRSVIFMRR*

Sequence

>CNT30242255
CTCGTGTTCATCCATTCCTCATGTACAATCAAAGAAACACACACATGCACATGCCCTCTTCTACACGTACGGTGCATCCCCGACCCCGAGCAAATTTGAT
TAAATTCCCTGATCGATCGGTCATATTTATGCGACGCTGAAGGATCCCGCTGCGTTCTCGACGAACTTCTTGGCGCCCTTGAACCACCTCTTGTCTCCGG
CCTGCGCCTTGCAGACGTAGAGCTTGCCGTCGGCGACGGTGGCGGTGATGAGCTGGTGCTTCCCTCCCTCGTCCCCGTCGGCCGTCCTGGTGAGCACCGT
TATGCTGTAGTACTGCTTCCCGTCCACCACCGGCGCGGAGCTCTCCAGCACGTTGGCCGTGGAGGAAGCCGACCTCGGAGAGGAACTGCTCAGGGGATCC
GTACTCGGTGATGGTCTTCTTGGTGGTGGGGTTGATTACGACGGAGAGGTTGCTGGTGGCGTCGAAGTTGTCCTCGTAGCGGAGCACCTGTCCGGGGAAC
TCACGCTCCTTGCTCGGGTTCCACTTGGCCGGGATCAACAGCTTGAAACCCTCCCCGCTGTACGTCTTGAAGTCCGTGTTCTTCTTCGCCTTCCCGAACA
CGTTCGCTGC