« Back to Actinidia chinensis search


Detailed information on CNT30560151


BLAST search results

BLAST vs Swiss-Prot:
sp|P16059|PSBP_PEA, E-value = 2e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694998Actinidia chinensisOryza sativa9.7321.2982.79122forward
CNT30673818Actinidia chinensisSetaria viridis9.0929.9285.09114forward
CNT30521507Actinidia chinensisSetaria italica9.8131.2284.55123forward
CNT30557390Actinidia chinensisPanicum hallii10.9320.1584.67137forward

Expression of CNT30560151

Peptides detected in this lncRNA

>peptide 1 (65 aa)
FEPSLVSGLGLANVELTIGHRGCDQLVFFYYIENFQAILKELAVLSTNFLAPLNHLLSPAWALQM*

>peptide 2 (45 aa)
MYNHDHLDFAMSSLKITSKTNCATNTYLYTYLYKPSHMGCVRSVT*

>peptide 3 (33 aa)
MKMCVNYSFPSNILVLPQIEFCRSRLASLANNPP

>peptide 4 (29 aa)
MRKVRNIKMSSILPCKKACGLVCTNENVC*

>peptide 5 (67 aa)
MSNTVCPRSPESLSPICLPLPPRSRRNHPVQFQYQFISFTLPSRTHFLQLLTNNNSSRLDTKYLYGL*

Sequence

>CNT30560151
TTTGAACCATCTCTTGTCTCCGGCTTGGGCCTTGCAAATGTAGAGCTTACCATTGGCCACCGTGGCTGTGATCAGCTGGTGTTTTTTTATTACATCGAAA
ATTTTCAAGCGATACTGAAAGAGCTAGCAGTGCTCTCCACAAACTTCCTAGCTCCTTTGAACCATCTCTTGTCTCCGGCTTGGGCCTTGCAAATGTAGAG
CTTACCGTCAGCCACCGTGGCCGTGATCAGCTGGTGTTTCCCGCCCTCGTCTCCGTCGGCAGTCCTAGTCAACACTGACAATGAGTAATACTGTTTGCCC
CCGATCACCGGAGTCGCTGTCTCCAATATGTTTGCCGTTGCCACCACGTTCTCGTCGAAACCACCCTGTCCAGTTCCAATACCAATTCATATCATTCACA
CTCCCCAGTAGGACACATTTCTTGCAGCTTCTTACTAATAACAATAGCTCCCGGCTCGATACCAAATATCTTTATGGATTATGACCAGTGACGGAGTGAG
AAATTTAAAATAAGTAGGGTACTTTCAATACCCCTCAAGACCTCCAATCTGGTCCTACACCGATGATTCGAACCGTTATAGACCTCTCGATCGCAATAAG
GTCTTCAATGCCAAAAATTAGTTTCATCAGATATCTATAAACACAAGAACAAATTGCATTTTGTTTTGCAAAATGAACGGCCGATATGGTTGTAAACTTA
AACCGTCTATTTCATAAGACAAAATGTGATTTGTTCCTGTATTTATAGATGACCAATAAAATTTATTTTTTAACCTTCACTGTTGGGCCTACGAGATGAA
CGATTCAGATAATTAATATGGGCTCGGAGATGGAGCCCACAAGAGAGTATGGATGAGTATGCAGGATGGGGTTTGGGGAGGAGCCGCTCTCAAATCTTGA
TTCAAATAAAGTCTTAAGCTATTATTAAAAAAAATTTGCTCCAATTCATGGGAAAGGGATCTTATGTACAACCATGACCACTTGGATTTTGCAATGTCCT
CATTAAAAATAACTTCAAAAACCAATTGTGCTACTAACACATATTTATACACCTATTTGTACAAACCTTCTCATATGGGATGCGTAAGGTCCGTAACATA
AAAATGAGTTCCATACTTCCATGTAAGAAAGCTTGTGGGCTTGTGTGTACAAATGAAAATGTGTGTTAATTACTCTTTCCCTTCAAATATATTAGTCTTA
CCTCAGATTGAGTTTTGCCGAAGTAGGCTTGCTTCCCTAGCAAATAATCCACCT