Detailed information on CNT30349048


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521677Eragrostis tefSetaria italica39.9390.8492.11228forward
CNT30387265Eragrostis tefTriticum turgidum27.6728.0188.61158forward
CNT30242694Eragrostis tefAvena sativa40.4640.687.45231forward
CNT30132420Eragrostis tefLolium perenne40.4637.3886.58231forward
CNT30583123Eragrostis tefEchinochloa crusgalli40.2847.2389.13230forward
CNT30557390Eragrostis tefPanicum hallii41.683592.44238forward

Expression of CNT30349048

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MKSVFALGFPNTFAAAPRRADWWRKQEVDAMALSLSLLMRLLARRLPLEECG*

>peptide 2 (70 aa)
INFKIPIFVQCTEWSYTLHGQHMQCFYILFVFYRHALEIGYKEQSSSIRSRVVVYRLIPWRGTPRVIRSR*

>peptide 3 (38 aa)
SISKFQYLFNVRSGATRCMVSICNASTYCSCSTDMLSK*

>peptide 4 (40 aa)
QFQNSNICSMYGVELHAAWSAYAMLLHTVRVLQTCSRNRI*

Sequence

>CNT30349048
ATCAATTTCAAAATTCCAATATTTGTTCAATGTACGGAGTGGAGCTACACGCTGCATGGTCAGCATATGCAATGCTTCTACATACTGTTCGTGTTCTACA
GACATGCTCTCGAAATAGGATATAAAGAACAGAGTTCATCTATCAGAAGCAGAGTAGTAGTGTATAGACTGATACCTTGGCGAGGAACTCCTCGGGTGAT
CCGAAGTCGGTGATGGTCTTCTTGTCGGTGGGGGTGATCATGACGGAGACGTTGCTGTTGGCGTCAAAGTTGTCCTCGTAGCGGAGCACCTGGCCGGGGT
ACTCGCGCTCCTTGCTGGGGTTCCACTTGGACGGGATCAGCAGCTTGAAGCCTTCGCCGCTGTACGCGATGAAGTCCGTGTTCGCCTTGGGCTTCCCGAA
CACGTTCGCTGCGGCGCCGAGGCGGGCGGACTGGTGGAGGAAGCAGGAGGTGGACGCCATGGCTCTTTCTCTCTCTCTGCTGATGCGCCTTCTCGCTCGC
CGGCTGCCGCTTGAAGAGTGTGGATGACAGACACTGCTCGCGGGCGTGTTAGCTCGCTCTGTGTTAACGAG