Detailed information on CNT30521685


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690183Setaria italicaOryza sativa45.7844.3490.78141forward
CNT30296041Setaria italicaTriticum aestivum88.3189.4783.09272forward
CNT30553207Setaria italicaOryza glaberrima102.27100.9683.49315forward
CNT30664085Setaria italicaTriticum dicoccoides89.6189.0382.97276forward
CNT3015504Setaria italicaZea mays84.4242.9885260forward
CNT3066721Setaria italicaLeersia perrieri56.8255.9188175forward
CNT30361461Setaria italicaSorghum bicolor101.3101.385.58312forward
CNT30596008Setaria italicaOryza meridionalis98.798.3884.87304forward
CNT30369785Setaria italicaOryza glumipatula90.5871.5484.23279reverse complement
CNT30108933Setaria italicaOryza longistaminata45.7845.4890.07141forward
CNT30100969Setaria italicaOryza rufipogon90.5891.4884.95279forward
CNT30574593Setaria italicaOryza barthii45.7845.1989.36141forward
CNT30115932Setaria italicaOryza nivara90.2691.4585.25278forward
CNT30603809Setaria italicaOryza punctata100.97101.385.53311forward
CNT30550736Setaria italicaOryza brachyantha100.65100.6584.84310forward

Expression of CNT30521685

Peptides detected in this lncRNA

>peptide 1 (32 aa)
PSSVARACNPSGGIQGGVDVGCGIWSWTRGCA*

>peptide 2 (38 aa)
MLGAEFGPGPVVVPKLACPFQVGSGWWGLDECLGPPWA*

Sequence

>CNT30521685
GCCGAGCTCAGTAGCGAGAGCTTGTAACCCAAGTGGGGGCATCCAAGGTGGCGTGGATGTTGGGTGCGGAATTTGGTCCTGGACCCGTGGTTGTGCCTAA
GCTGGCCTGCCCGTTCCAAGTTGGTAGTGGCTGGTGGGGCTTAGACGAATGTCTTGGGCCTCCCTGGGCCTAAAGTGGCAGGAATAGCGTGAGGCTGGCT
TCACAGAGCAGCGATCACTGGCCCGCTTCCAACGGTGGGAGGATAACAGGCTGCTGCACCATGAGCCCGCTTAGGCCCAAAGTCCCACTGCAACAGACCG
CCATCTTT