Detailed information on CNT30664085


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692506Triticum dicoccoidesOryza sativa40.6543.7590.48126forward
CNT30521685Triticum dicoccoidesSetaria italica89.0389.6182.97276forward
CNT30296041Triticum dicoccoidesTriticum aestivum100101.9795.48310forward
CNT30553207Triticum dicoccoidesOryza glaberrima46.1345.8389.51143forward
CNT30439638Triticum dicoccoidesAegilops tauschii100.32101.9792.28311forward
CNT3066721Triticum dicoccoidesLeersia perrieri30.3230.0394.6894forward
CNT30368288Triticum dicoccoidesSorghum bicolor62.5849.2485.05194forward
CNT30596008Triticum dicoccoidesOryza meridionalis56.1356.3186.21174forward
CNT30369869Triticum dicoccoidesOryza glumipatula43.2342.9590.3134forward
CNT30572433Triticum dicoccoidesVitis vinifera21.2911.9887.8866reverse complement
CNT30108933Triticum dicoccoidesOryza longistaminata31.2931.2993.8197forward
CNT30100969Triticum dicoccoidesOryza rufipogon89.3590.8283.75277forward
CNT30574593Triticum dicoccoidesOryza barthii55.4855.1384.88172forward
CNT30603809Triticum dicoccoidesOryza punctata45.8146.2592.25142forward

Expression of CNT30664085

Peptides detected in this lncRNA

>peptide 1 (30 aa)
RAQSRELVTHVGALKVVWIFGANSGPGPVL*

>peptide 2 (42 aa)
PSSVTRACHPCGGIEGGVDIWCELWTWACVVTFIAGLPGPSW*

Sequence

>CNT30664085
GCCGAGCTCAGTCACGAGAGCTTGTCACCCATGTGGGGGCATTGAAGGTGGTGTGGATATTTGGTGCGAACTCTGGACCTGGGCCTGTGTTGTAACATTC
ATTGCTGGCCTGCCCGGTCCAAGTTGGTAGTTGGCTGGGGGGCTGATGCGAAAGCTTCGGCCTCTCTGTCCCTGAAGTGGCAGGCACCGCGTTAGGCTGG
ATTCACAGAGCAGCGCTCACTGTCCGCTTCCAACGGTGGAAGGATAACAGGCCGCTGCACCATGGGCCCGCTCTGGTTCCAGAGTTCTTCCATAACAGAC
CACCATCTTT