Detailed information on CNT30589645


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SU35|ERLL1_ARATH, E-value = 4e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692548Musa acuminataOryza sativa20.4814.486.49111forward
CNT30671301Musa acuminataSetaria viridis14.5822.5188.6179forward
CNT30629257Musa acuminataVigna unguiculata23.6222.2282.03128forward
CNT30187285Musa acuminataSecale cereale18.8227.5787.25102forward
CNT30306637Musa acuminataTriticum aestivum21.5913.5384.62117forward
CNT30226858Musa acuminataHordeum vulgare21.5941.6486.32117forward
CNT30553070Musa acuminataOryza glaberrima20.4813.7986.49111forward
CNT30664801Musa acuminataTriticum dicoccoides17.1629.7183.8793forward
CNT3067194Musa acuminataLeersia perrieri21.420.185.34116forward
CNT30685047Musa acuminataTriticum urartu21.2221.7482.61115reverse complement
CNT30365845Musa acuminataSorghum bicolor22.3225.7483.47121forward
CNT30596926Musa acuminataOryza meridionalis20.4811.6587.39111forward
CNT30369753Musa acuminataOryza glumipatula20.4812.2286.49111forward
CNT30105270Musa acuminataOryza longistaminata23.2524.2883.33126forward
CNT30101038Musa acuminataOryza rufipogon20.4816.9785.59111forward
CNT30575612Musa acuminataOryza barthii20.4814.0386.49111forward
CNT30116352Musa acuminataOryza nivara20.4813.2886.49111forward
CNT30593752Musa acuminataEragrostis curvula21.599.7985.47117forward

Expression of CNT30589645

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MACRVWESVWVWAKAWASSEVKKRRLRQRSRAVEEEAISCRVTWTRNGRGIRRSVLWL

>peptide 2 (88 aa)
MPKMLALMAVQRHKAASKSARPSMRLQQGFLGGVPIWRLMRPPSTLAQAPSLTVSMGQDGMPGLGVGLGLGEGLGFIGGEEEEAEAEE*

>peptide 3 (29 aa)
MAVTTKKNTRSWLQLKRTGSHRGPSCRSS*

>peptide 4 (41 aa)
LEIKALALSLHQLNNRSGYTRVHGCHNEEEHEIMAATQAHR*

Sequence

>CNT30589645
ACTGGAGATAAAGGCTTTAGCATTAAGCCTCCACCAACTAAATAATCGAAGTGGATACACACGAGTACATGGCTGTCACAACGAAGAAGAACACGAGATC
ATGGCTGCAACTCAAGCGCACAGGTAGCCATAGGGGACCTTCTTGCCGCAGTAGTTGAGGAGGAGGGTGAGATCGACGTCGACGTTGAGGCTGATGCCCA
AGATGTTGGCCTTGATGGCGGTGCAGAGGCACAAGGCGGCTTCGAAGTCGGCGAGGCCCTCGATGAGGCTACAGCAGGGTTTCTTGGGCGGGGTGCCGAT
CTGGAGGTTGATGAGGCCGCCGAGCACGTTGGCGCAGGCGCCCAGCTTGACCGTGTCGATGGGACAGGATGGCATGCCGGGTTTGGGAGTCGGTTTGGGT
CTGGGCGAAGGCTTGGGCTTCATCGGAGGTGAAGAAGAGGAGGCTGAGGCAGAGGAGTAGAGCGGTGGAGGAAGAAGCCATCTCCTGTCGAGTAACTTGG
ACGAGGAACGGAAGGGGAATACGTAGGAGTGTACTTTGGCTT