Detailed information on CNT30100906


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692524Oryza rufipogonOryza sativa25.0542.56100249forward
CNT30553070Oryza rufipogonOryza glaberrima22.9428.3299.12228forward

Expression of CNT30100906

Peptides detected in this lncRNA

>peptide 1 (33 aa)
SLHPTAATEAASPAASGWGSRARMPALHPSAWR*

>peptide 2 (64 aa)
MREMRQAKGQWFWDPHGEATRPASARRSGTYSLHPTAATEAASPAASGWGSRARMPALLHPSAW*

>peptide 3 (67 aa)
PSTRRRRRRRRHRRRRGGAVGLACLHCTHLHGDDHIQSNDEHRTNLHLILAAAHRIGLLSYFLIVLA*

>peptide 4 (70 aa)
MVRQHAQLQRVDRALIPSTRRRRRRRRHRRRRGGAVGLACLHYCTHLHGEEHIEGKEQRTNLHLLAGHLN*

>peptide 5 (46 aa)
MLFIGSSRCPSPIYILWLSIACMQFYFILNSLLIFIYSRPPHCYRG*

>peptide 6 (48 aa)
MAIVSGTTFFAQWNDRHDAVCYLRFTSQSINYINSISIYPLKSHVEPI*

>peptide 7 (37 aa)
MWNQYDTASSLSSLSLFNHLSQEIKRVINQFFSVNQG*

>peptide 8 (32 aa)
MEMTIFRATTNTAQTCTLFLPPPIVLDYLATS*

Sequence

>CNT30100906
TTCCCTCCACCCGACGGCGGCGACGGAGGCGGCGTCACCGGCGGCGTCGGGGTGGGGCAGTAGGGCTCGCATGCCTGCACTGCACCCATCTGCATGGAGA
TGACCATATTCAGAGCAACGACGAACACCGCACAAACCTGCACCTTATTCTTGCCGCCGCCCATCGTATTGGACTACTTAGCTACTTCTTAATTGTACTA
GCTTAATTAATTGATGATGATATAGTATATTTTGCTGCTGCTAGCTAGCTAGCTTGGGATGCTATTTATAGGCAGCTCCAGGTGCCCAAGCCCTATATAT
ATATTGTGGCTATCCATCGCTTGCATGCAGTTTTATTTTATTTTAAATTCATTATTAATATTTATATATTCTCGCCCGCCCCATTGCTATCGTGGCTAGC
TAGCTGAGCTGATGCCAACTAGTCTAACGTACAATAACCTAAACTGATGGCCATCGTGTCAGGGACGACATTCTTCGCGCAATGGAATGATCGACATGAT
GCAGTTTGCTACCTAAGGTTTACCAGTCAATCCATCAATTATATCAATAGTATATCGATCTACCCTCTGAAATCCCATGTGGAACCAATATGACACTGCC
TCTTCTCTCTCATCTCTCTCCCTTTTTAATCATTTATCTCAAGAAATTAAAAGGGTGATCAATCAGTTTTTCTCTGTTAACCAAGGCTGATAGTAGGCCA
GCACGGTAAATGAGAGAGATGAGGCAGGCCAAAGGCCAGTGGTTTTGGGATCCTCATGGTGAGGCAACACGCCCAGCTTCAGCGCGTCGATCGGGCACTT
ATTCCCTCCACCCGACGGCGGCGACGGAGGCGGCGTCACCGGCGGCGTCGGGGTGGGGCAGTAGGGCTCGCATGCCTGCACTACTGCACCCATCTGCATG
GTGAAGAGCACATTGAGGGCAAGGAACAGCGCACAAACCTGCACCTTCTTGCCGGCCATCTTAATTAATTAGCTAGCTCTACTACTGCTTAGCA