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Detailed information on CNT30296862


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7I2|AIR1_ARATH, E-value = 6e-11

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692548Triticum aestivumOryza sativa45.9128.487.21219forward
CNT30187312Triticum aestivumSecale cereale103.1492.3190.65492forward
CNT30392194Triticum aestivumTriticum turgidum16.3520.3194.8778forward
CNT30553070Triticum aestivumOryza glaberrima45.9127.287.21219forward
CNT30685047Triticum aestivumTriticum urartu46.9642.3491.07224reverse complement
CNT30369850Triticum aestivumOryza glumipatula45.9127.1487.21219forward
CNT30575711Triticum aestivumOryza barthii45.9130.3786.76219forward
CNT30116276Triticum aestivumOryza nivara45.9126.986.76219forward

Expression of CNT30296862

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MNKLFIPRMCTSMYIILQIWESSRYHNVGNTMIDD*

>peptide 2 (31 aa)
MHSQCKKENVSMYACTSHDYSCTYKYNMHSL*

>peptide 3 (46 aa)
MPRTLALMAVQRHTAASRSARPLRSGQHCSLAGTPRLSSSRFSTLAH

>peptide 4 (76 aa)
MDLARAGEVGGAGLAALVEKQHEVDGDVDLDAQNVGLDGGAEAHGGVQVGEAPQERAALLARRHAEVELQQVQYVGA

Sequence

>CNT30296862
TCTGGTTAACACAACATGAACAAACTTTTTATTCCACGTATGTGTACAAGTATGTATATAATTTTACAAATATGGGAATCATCTAGATACCATAACGTAG
GGAATACAATGATCGATGACTAGCTTATGCATAGTCAGTGCAAGAAAGAAAACGTAAGCATGTATGCATGCACGAGCCACGACTACTCATGCACATATAA
GTATAACATGCATAGTTTGTGATATTTAGCTCGATCGATGTATCAATGGATTTAGCTAGGGCAGGTGAAGTCGGCGGGGCAGGTCTTGCCGCACTGGTTG
AGAAGCAGCACGAGGTCGACGGGGACGTTGACCTTGATGCCCAGAACGTTGGCCTTGATGGCGGTGCAGAGGCACACGGCGGCGTCCAGGTCGGCGAGGC
CCCTCAGGAGCGGGCAGCACTGCTCGCTCGCCGGCACGCCGAGGTTGAGCTCCAGCAGGTTCAGTACGTTGGCGCAC