Detailed information on CNT30116284


BLAST search results

BLAST vs Swiss-Prot:
sp|P24629|HSP71_SOLLC, E-value = 3e-19

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535611Oryza nivaraEucalyptus grandis38.664.1494.23104forward
CNT30569551Oryza nivaraActinidia chinensis27.887.4489.3375forward
CNT30552909Oryza nivaraOryza glaberrima72.1270.5590.72194forward
CNT30440625Oryza nivaraAegilops tauschii29.7428.4788.7580forward
CNT30625786Oryza nivaraDaucus carota32.3410.1991.9587forward
CNT30369767Oryza nivaraOryza glumipatula48.750.9790.08131forward

Expression of CNT30116284

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MISTRSMPIAGPSPLVGAMAPPPARGSRRRREERVNEERERGG*

>peptide 2 (88 aa)
VLGGIPDEALGVREPDVGGGGAVPLVVGDDLDAVDADRWPLPLGRRHGSSSRSRVAAAARGTSERGERERRLGFPRMREEEWRRGGECG

Sequence

>CNT30116284
GGTTCTTGGCGGCATCCCCGATGAGGCGCTCGGTGTCCGTGAACCCGACGTAGGAGGGGGTGGTGCGGTTCCCCTGGTCGTTGGCGATGATCTCGACGCG
GTCGATGCCGATCGCTGGCCCCTCCCCCTTGGTCGGCGCCATGGCTCCTCCTCCCGCTCGCGGGTCGCGGCGGCGGCGCGAGGAACGAGTGAACGAGGAG
AGAGAGAGAGGAGGCTAGGGTTTCCGCGGATGCGGGAGGAGGAGTGGAGGAGAGGAGGCGAGTGCGGCT