Detailed information on CNT3067329


BLAST search results

BLAST vs Swiss-Prot:
sp|P25776|ORYA_ORYSJ, E-value = 1e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676299Leersia perrieriSetaria viridis96.8545.1486.99246forward
CNT30711290Leersia perrieriGlycine max20.874.0288.6853forward
CNT30586233Leersia perrieriMusa acuminata29.1318.7891.8974forward
CNT30462305Leersia perrieriSaccharum spontaneum42.5226.3487.96108forward
CNT3017206Leersia perrieriZea mays90.5578.586.52230forward
CNT30653584Leersia perrieriRosa chinensis35.4311.8786.6790forward
CNT30344730Leersia perrieriEragrostis tef99.6121.4689.33253forward
CNT30366246Leersia perrieriSorghum bicolor29.1316.0593.2474forward
CNT30370041Leersia perrieriOryza glumipatula99.6124.5291.7253forward
CNT30319475Leersia perrieriAsparagus officinalis21.262.1192.5954forward
CNT30119217Leersia perrieriCitrus clementina20.475.7790.3852forward
CNT30575980Leersia perrieriOryza barthii46.8557.7790.76119forward
CNT30585367Leersia perrieriEchinochloa crusgalli59.8451.5384.21152forward
CNT30603971Leersia perrieriOryza punctata10016.2192.52254forward

Expression of CNT3067329

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MAGLGQGLEGSRPSSEGRMAQRQCRTCRWSP*

>peptide 2 (83 aa)
EAGSLLNIADGVVMRAAAVVIIAAGGALRASVVVVTDGWRRCRRWRGWARVWRVLARLQRVGWLNGNAALAAGRLDVALHPDIA

Sequence

>CNT3067329
TGAGGCAGGTTCCCTGCTGAACATTGCAGATGGGGTAGTCATGAGGGCAGCAGCTGTAGTGATCATCGCAGCAGGTGGTGCTCTCAGGGCAAGTGTAGTA
GTTGTCACAGACGGTTGGAGGCGGTGCAGGCGATGGCGGGGTTGGGCCAGGGTTTGGAGGGTTCTCGCCCGTCTTCAGAGGGTAGGATGGCTCAACGGCA
ATGCCGCACTTGCCGCTGGTCGCCTTGATGTTGCGCTCCATCCGGACATAGCCA