Detailed information on CNT30676299


BLAST search results

BLAST vs Swiss-Prot:
sp|P25776|ORYA_ORYSJ, E-value = 7e-44

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30462305Setaria viridisSaccharum spontaneum22.7530.2487.9124forward
CNT304435Setaria viridisZea mays23.4914.7192.97128forward
CNT3067329Setaria viridisLeersia perrieri20.3743.790.99111forward
CNT30653821Setaria viridisRosa chinensis15.7822.3483.7286forward
CNT30344730Setaria viridisEragrostis tef24.5911.3791.79134forward
CNT30370041Setaria viridisOryza glumipatula21.4711.3488.89117forward
CNT30575980Setaria viridisOryza barthii21.8357.7784.03119forward
CNT30585367Setaria viridisEchinochloa crusgalli22.3941.3692.62122forward
CNT30603971Setaria viridisOryza punctata21.477.4788.03117forward

Expression of CNT30676299

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MGAAAVVVVAAGGALRARVVVVADGRRRGGGRRRRAGVRGVGALLQRVRGLHGDAALAAGRLDVALHPDVAFLAPAAAPRVL

>peptide 2 (78 aa)
RSSDHRGCWWPDTMLRLLHALLFMPSAELPEKAQCGLARVRFRAFTDSGLSLLCSSPNYQLESDEVYNDFTAELRKTL*

Sequence

>CNT30676299
GCAGGAGCTCTGATCACCGTGGCTGTTGGTGGCCTGATACCATGCTGAGATTGCTTCACGCGCTGCTCTTCATGCCGTCAGCTGAGTTGCCAGAGAAAGC
CCAGTGCGGCTTGGCCAGGGTGCGCTTCAGAGCCTTCACTGACAGTGGGCTGTCCTTGCTCTGTTCGTCGCCAAATTACCAGTTAGAATCAGACGAAGTT
TACAATGATTTCACAGCCGAGTTAAGGAAAACATTGTGAAATGGTCCGAGCATTTACCGTGAGGCAGGTTCCCTGCTGTACGTTGCAGACGGGGTAGTCA
TGGGGGCAGCAGCTGTAGTGGTCGTCGCAGCAGGTGGTGCTCTCCGGGCACGAGTAGTAGTTGTCGCAGACGGTCGGCGGCGGGGTGGGGGACGGCGGCG
TCGGGCCGGGGTTCGGGGGGTTGGCGCCCTTCTTCAGAGGGTACGAGGGCTCCACGGCGATGCCGCACTTGCCGCTGGACGACTTGACGTTGCGCTCCAT
CCGGATGTAGCCTTTCTCGCCCCAGCTGCCGCCCCACGAGTTCTT