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Detailed information on CNT30370041


BLAST search results

BLAST vs Swiss-Prot:
sp|P25776|ORYA_ORYSJ, E-value = 1e-90

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676299Oryza glumipatulaSetaria viridis11.3421.4788.89117forward
CNT30287698Oryza glumipatulaTriticum aestivum12.530.582.17129forward
CNT30462305Oryza glumipatulaSaccharum spontaneum14.9237.5687.66154forward
CNT3017206Oryza glumipatulaZea mays13.7648.4689.44142forward
CNT3067329Oryza glumipatulaLeersia perrieri10.7643.795.5111forward
CNT30340129Oryza glumipatulaEragrostis tef20.9319.4887.5216forward
CNT30575980Oryza glumipatulaOryza barthii15.7979.1399.39163forward
CNT30585367Oryza glumipatulaEchinochloa crusgalli18.9966.4487.24196forward
CNT30603971Oryza glumipatulaOryza punctata58.2438.3594.68601forward

Expression of CNT30370041

Peptides detected in this lncRNA

>peptide 1 (36 aa)
FLREARYNFAHWQDPKSQEHDHQHCKRMRYWYGIHE*

Sequence

>CNT30370041
GTTTCTGAGGGAAGCCAGGTATAATTTTGCTCATTGGCAAGACCCCAAAAGTCAAGAGCATGATCATCAGCACTGCAAGCGAATGAGATATTGGTATGGA
ATACATGAATGATGGATTAATATGGCAATGACATGGATTAATATGGCAATGACCTTATCTTGTTCCAATATCAATTTGCAGTTCCGTCGAACTGGCATCT
AGGAGCTTAGGAGCAAACCTAGCTGAATTTTACATATACATTCAGAAGCAAATTTGGCAGTTCTGTAACCAACTGAACCCGTTTTTTTAGATTTTATGTA
CACGAGAAATCTATTATAAAAGCAGATATACTTGGTGCGCAGGGTTCGCCGCCGAGCTGCGCAATCGTCTTCGTCAGTTACCAGCTGATCATTTGATGAT
GCAACCACGCTGGCTCTGGACGGTCTGATACGGTTCTGAAATTGCTCAAGCGCTGCTCTTCTTGCCGTTGCCAAACAAGAAAGACAAGTTTGGCTTTGCC
AGGGTACGCTTCAGAGCCTTCACTGCCAGTGGACTGTCCTTAGCCTGTTGTGTTCATCAAGCAACAAAACAGTAAGAATCACAGGGAATTCTTGCACTTG
CAACAGTGCTAGTAAATTACCAATCTCTGCAGTTGCTTACCATGAGGCAGGTTCCCTGCTGAACATTGCAGATGGGGTATTCGTGAGGGCAGCAGCTGTA
GTGATCATCGCAGCAGGTGGTGCTATCGGGGCAAGTGTAGTAGTTGTCGCAGACGGTGGGAGGCGGGGTTGGGGACGGCGGAGTAGGGCCGGGGTTCGGG
GGGTTCTCGCCCTTCTTCAGAGGGTAGGATGGCTCAACGGCAATGCCGCACTTGCCACTGCTCGCCTTGATGTTGCGCTCCATACGGACGTAGCCGGACT
CACCCCAGCTCTTGCCCCACGAGTTCCTCACGATCCAGTAGTCCTTGCCATTCTCTGTGCCGTACCCAACAGCAGCGACGCCGTGGTCTAGTGCTGTTCC
ACATTTACCCGTGAAGATACCCTAAGAATGAT