Detailed information on CNT30344730


BLAST search results

BLAST vs Swiss-Prot:
sp|P25776|ORYA_ORYSJ, E-value = 6e-68

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676299Eragrostis tefSetaria viridis11.3724.5991.79134forward
CNT30462305Eragrostis tefSaccharum spontaneum17.1349.2789.11202forward
CNT304435Eragrostis tefZea mays16.6222.5391.33196forward
CNT3067329Eragrostis tefLeersia perrieri9.4143.794.59111forward
CNT30653821Eragrostis tefRosa chinensis7.7223.6485.7191forward
CNT30585367Eragrostis tefEchinochloa crusgalli17.5670.1792.27207forward

Expression of CNT30344730

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MIAQSTSCTMPHLQQDIKMMTQIKMLQKEGTVSSKGT*

>peptide 2 (47 aa)
MNSNSKVSGAYRAVELERSATSLNCNTDGLVCDRLLQTLLAVRGYVFI

>peptide 3 (31 aa)
MCSTNEFQQQGKWRLPSCRAGTLCHQPQLQH*

>peptide 4 (31 aa)
MISAKWVGALNCTTNCSRCSILFSLVVATCK*

>peptide 5 (91 aa)
MRAAAVVIIAAGGALRAGVVAVADGGRRRRGRRRRTGVRRVLALLQRVGRLHGDAALAARRLDVALHPDVAGLAPAGAPRVLHDPVVLAVL*

Sequence

>CNT30344730
TACTGAAATTGTCAGAGTATTTACCGTGAGGCAGGTTCCCTGCTGGACATTGCAGACGGGGTAGTCATGAGGGCAGCAGCTGTAGTGATCATCGCAGCAG
GTGGTGCTCTCCGGGCAGGTGTAGTAGCTGTCGCAGACGGTGGGCGGCGGCGTCGGGGACGGCGGCGTCGGACCGGGGTTCGGCGGGTTCTCGCCCTTCT
TCAGAGGGTAGGACGGCTCCACGGCGATGCCGCACTTGCCGCTCGACGCCTTGATGTTGCGCTCCATCCTGACGTAGCCGGACTCGCCCCAGCTGGCGCC
CCACGAGTTCTTCACGATCCAGTAGTCCTTGCCGTTCTCTGAACCGTAGCCGACGGCGGTGACACCGTGGTCCAGCGCTGTTCCACACGTTCCGGTGAAG
ATACCCTGAGAGATCAAAAAATGGTTATCAGTATCAGTACATTGTCTATCATGGAAATGGAATTAATATAACAGAAAGAAAGCATTCGATAGAAAAGGCT
GTCTGTGAGGCCAATGCAATTGTTTTTAAGTGCAAGTTTTACTTTATGACAAGGAAAGACACTTTCAGAATCTTCTGATGACACTTTGCTGTTTTTGCAG
CAGAAGTGGATGATAGCTCAATCCACTTCCTGCACTATGCCGCATTTACAACAAGACATCAAAATGATGACACAAATTAAAATGCTTCAGAAAGAGGGGA
CAGTAAGCAGCAAAGGAACATGATCTCTGCGAAATGGGTGGGGGCACTTAATTGTACTACAAATTGTTCCAGATGTAGTATCCTATTTTCCTTAGTAGTG
GCAACTTGCAAGTGACAACAGAATCATTCCATTCCGTGAAATAATCCAGACTAACGATGCGAATGCGACAGCTTTAAAGCGATTAGGTGACCAGACCTAA
CATGAGCGTTTTTTTTTAATCTAAGATAGAATGGCAGATGCTCCTAATCCATCAAACAGGTTGCTGTAACTTACTGCTGCCTACTGAGAAAAATTCAGAA
CTTCATTTGTAACTTAACGACATGTGCTCAACAAATGAATTCCAACAGCAAGGTAAGTGGCGCTTACCGAGCTGTAGAGCTGGAACGCTCTGCCACCAGC
CTCAATTGCAACACTGACGGGCTGGTTTGCGACCGCCTTCTGCAGACTCTTCTCGCTGTTCGGGGTTACGTCTTCATAG