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Detailed information on CNT30583035


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 1e-95

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30340485Echinochloa crusgalliEragrostis tef52.7556.8991.56557forward
CNT30368340Echinochloa crusgalliSorghum bicolor21.1249.3494.62223forward
CNT30115627Echinochloa crusgalliOryza nivara44.0327.1685.16465forward

Expression of CNT30583035

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MKPPVPSGSDRAGAGPDDEGRLPGRRPGDGRLDGAAEKLAPGEESLSRHGSRTLACCLLPTRRAAAAVSA

>peptide 2 (45 aa)
MNTIMHDATRLKPTVHQPAASMHMIEQRHIIIMYVSLPLHSNIMQ*

>peptide 3 (74 aa)
MASMASLPFLISLSLSSFISFSVLPNPSGLKSGPPGNFSRPRKYCLPMDPGLYQSWRRRCSAKPMSAMLKTKSV*

Sequence

>CNT30583035
CTCGGCAAATGTCGGGTTTCCCGTAGTGGATGAAATAACACTTCATTATTTCACTCATACCATAACTAGAGATATTTGATCAGAATTGTACATCGATTTA
CCATGTGCAATGTCTCAATTAACAGGATCGATTACTAATTTGTTACAAGCAGCTAGCGTGCAGGCCGGCCAGCGATATATATGAATACAATCATGCATGA
TGCAACACGCCTCAAACCCACTGTCCATCAGCCAGCAGCCAGCATGCATATGATCGAACAACGACACATCATCATCATGTACGTCTCGCTCCCACTACAC
AGCAATATAATGCAATAATCCTCTAGTGGAACTTGAGGCTGGTGAGGACGTTGTTGTTGACTGGGTCTGCCAGGTGGTCTAGCAGGTTCTGGAACGGGCC
GACGCCGGTGACGAGGCCCTGGATGAAGTAGCCGAGGATGGCGAGCATGGCGAGCCTGCCGTTCTTGATCTCCTTGAGCTTGAGCTCCTTCATCTCCTTC
TCCGTCTTGCCGAACCCTAGCGGGTTGAAGAGCGGGCCGCCGGGGAACTTCTCGAGGCCGAGGAAGTACTGCTTGCCCATGGACCCCGGGTTGTACCAGT
CCTGGAGGCGGCGGTGCTCGGCGAAGCCCATGAGCGCCATGTTGAAGACGAAGAGCGTGTAGGAGTCGGCCCAGTAGTCGTAGGTGCCCGCCGGCGGGAT
CACGCCCGTCTTGAACCACGGCAGCGCCGTCTCCGCCGGGATGATGCCCAGCTTGCCGAAGATCTCGGGGGCGATGGCGCCGAACGCGCCGAGCATGGCG
AACCGCCCGTTGATCACCTCGCCGTAGGCCAGCCACTTGGGCTCGATGAAGCCGCCGGTGCCCTCGGGGTCGGACAGGGCTGGAGCTGGCCCTGACGACG
AAGGGCGCCTTCCTGGCAGACGACCGGGAGACGGCCGACTGGACGGGGCGGCCGAGAAGCTGGCGCCCGGAGAGGAGAGCCTGAGCCGCCATGGATCACG
TACGCTAGCTTGTTGCTTGCTTCCGACAAGGCGCGCTGCTGCTGCGGTATCTGCGG