Detailed information on CNT30340473


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 3e-15

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30368340Eragrostis tefSorghum bicolor27.4249.5691.96224forward
CNT30557458Eragrostis tefPanicum hallii25.74293.33210forward

Expression of CNT30340473

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MTPVLNHGSAVSAGIRPSLPNTSGAMAPAAPSIAKRPLITSPYASHLGSMKPPVPSGSDRPNGSKPKSPGSLQ

>peptide 2 (89 aa)
MLRRSNTGEEELYINLPCAIQYPVSTRRSIVIMLQAAGWRCMNRDAVPQTLHHHQPARTNTHISSLNCTDGQQLATQRARKKGSTAQSF*

>peptide 3 (29 aa)
MQCLKRFTIISQREPTHTSRRSIAPTGSS*

>peptide 4 (66 aa)
MASMASLPFLISLSLSSLSDFSSLPNPSGLKIGPPGNFSRPRKYCLPMDPGACRGRPSSCKCRPAG*

Sequence

>CNT30340473
GTCGAAGTAATTGTTCGCAATGTTGAGACGTAGTAACACGGGGGAGGAGGAATTGTACATTAATTTACCATGTGCAATACAATATCCGGTCTCAACAAGA
CGATCAATTGTTATAATGTTACAGGCAGCAGGCTGGCGATGCATGAATCGTGATGCAGTGCCTCAAACGCTTCACCATCATCAGCCAGCGCGAACCAACA
CACACATCTCGTCGCTCAATTGCACCGACGGGCAGCAGCTAGCAACGCAACGGGCTAGAAAGAAAGGCAGTACAGCGCAATCTTTCTAGTGGAACTTGAG
GCTGGTGAGCACGTTGTTGTTGACAGGGTCGGCGAGGTGGTCGAGCAGGTTCTGGTAGGGGCCTTCGCCGGTGACGAGTCCCTGGATGAAGTAGCCCAGG
ATGGCGAGCATGGCGAGCCTGCCGTTCTTGATCTCCTTGAGCTTGAGCTCCTTGAGCGACTTCTCGTCCTTGCCGAATCCGAGCGGGTTGAAGATCGGGC
CGCCGGGGAACTTCTCGAGGCCGAGGAAGTACTGCTTGCCCATGGACCCCGGAGCGTGTAGGGGTCGGCCCAGTAGTTGTAAGTGCCGGCCGGCGGGATG
ACGCCCGTCTTGAACCACGGCAGCGCCGTCTCCGCCGGGATCAGGCCCAGCTTGCCGAACACCTCCGGCGCGATGGCGCCCGCCGCGCCAAGCATCGCGA
AACGCCCGTTGATCACCTCCCCGTACGCCAGCCACTTGGGCTCGATGAAACCGCCGGTGCCCTCTGGGTCCGACAGGCCCAACGGGTCGAAGCCGAAGTC
GCCGGGCAGCCTGCAAC