Detailed information on CNT30360756


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675451Lactuca sativaSetaria viridis14.7727.4782100forward
CNT30375469Lactuca sativaArabidopsis thaliana36.6331.7983.06248forward
CNT30293788Lactuca sativaTriticum aestivum12.2633.285.5483forward
CNT30222759Lactuca sativaHordeum vulgare31.7643.0982.79215forward
CNT3014813Lactuca sativaZea mays12.4128.9788.184forward
CNT30342208Lactuca sativaEragrostis tef33.6871.2583.33228forward
CNT30363182Lactuca sativaSorghum bicolor20.8343.9382.27141forward
CNT30595630Lactuca sativaOryza meridionalis12.738.3986.0586forward
CNT3036024Lactuca sativaCucumis melo36.6320.6782.66248forward
CNT30149182Lactuca sativaBrachypodium distachyon27.3353.4782.16185forward
CNT3099688Lactuca sativaOryza rufipogon20.5329.8384.17139forward
CNT30574876Lactuca sativaOryza barthii20.5349.4784.17139forward
CNT30115498Lactuca sativaOryza nivara33.5332.2984.58227forward
CNT30550454Lactuca sativaOryza brachyantha36.4822.583247forward
CNT30115390Lactuca sativaEutrema salsugineum29.2536.882.32198forward

Expression of CNT30360756

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MNFGLKNVYFLAFVKNPKSNAKLKSDNPLFRNL

>peptide 2 (52 aa)
MTNLNDDMHVKLLGVQPNAFIEREEVAMSVLILAPVLKVFENRVHLVLRVCL*

>peptide 3 (48 aa)
QCQPILNQLVSLGMQPTALKPGQQYVGFSSSSSPMECHLFPQLQLSLN*

>peptide 4 (69 aa)
AMSTDPESIGFIRYAANSSETRAAICGILFKFFTNGMSSVSPIAIIFELMILYIQYSWEYPSCRSVRLQ*

Sequence

>CNT30360756
GCAATGTCAACCGATCCTGAATCAATTGGTTTCATTAGGTATGCAGCCAACAGCTCTGAAACCAGGGCAGCAATATGTGGGATTCTCTTCAAGTTCTTCA
CCAATGGAATGTCATCTGTTTCCCCAATTGCAATTATCTTTGAATTGATGATTCTCTACATCCAATACAGCTGGGAATATCCTAGCTGTCGTTCGGTTCG
TCTGCAGTAACACAATAAGCACCACTTAATGAACTTCCTTAGGACATGACTTAATCCAATAAGCTATACATAAGTGACTTTTTTCTCGATGCACTAAACA
AATCAATCAAAAGTACATTTTGCTATTTCTTGCATTTGAGTCTCAAGAGTCAAGATGACAAACCTCAATGATGACATGCATGTCAAACTCCTTGGTGTTC
AGCCCAATGCCTTCATAGAAAGAGAAGAAGTCGCCATGTCTGTTCTCATCTTGGCACCAGTTCTCAAAGTATTTGAAAATCGGGTACACTTGGTACTCAG
GGTTTGTCTTTAGATGCCTGTATATTGTTATGTATCTCCAGTACCCGATCTTTTCTGACAGATATGTCGCGTAGAATATGAATTTTGGCTTGAAAAATGT
GTACTTTCTTGCTTTTGTCAAGAACCCTAAGTCCAATGCCAAGTTGAAATCGGATAATCCCTTGTTCAGAAATCTGC