Detailed information on CNT30342208


BLAST search results

BLAST vs Swiss-Prot:
sp|Q5EFU4|CRD1_HORVU, E-value = 1e-76

BLAST vs NONCODE:
NONGMAT001508, E-value = 4e-49

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30375469Eragrostis tefArabidopsis thaliana85.6235.1383.58274forward
CNT30524694Eragrostis tefPhaseolus vulgaris26.8830.683.7286forward
CNT30293788Eragrostis tefTriticum aestivum56.8872.892.86182forward
CNT30222759Eragrostis tefHordeum vulgare7548.192.5240forward
CNT3014813Eragrostis tefZea mays56.2562.0795180forward
CNT30363182Eragrostis tefSorghum bicolor70.6270.494.25226forward
CNT30595630Eragrostis tefOryza meridionalis4057.1492.19128forward
CNT30360756Eragrostis tefLactuca sativa71.2533.6883.33228forward
CNT3036024Eragrostis tefCucumis melo77.520.6781.85248forward
CNT30149182Eragrostis tefBrachypodium distachyon80.3174.2891.83257forward
CNT3099688Eragrostis tefOryza rufipogon46.8832.1996150forward
CNT30574876Eragrostis tefOryza barthii46.8853.3896150forward
CNT30115498Eragrostis tefOryza nivara86.8839.5493.17278forward
CNT30557835Eragrostis tefPanicum hallii56.8829.4593.96182forward
CNT30550454Eragrostis tefOryza brachyantha86.8825.3292.45278forward
CNT30115390Eragrostis tefEutrema salsugineum82.8149.2684.15265forward

Expression of CNT30342208

Peptides detected in this lncRNA

>peptide 1 (47 aa)
TERQKNRDQSLAFQSLRNCGCALSSAEKKSPCLFSSWHQFSKYLNMG*

Sequence

>CNT30342208
ACCGAGAGGCAGAAGAACCGTGACCAGAGCTTGGCCTTCCAGTCATTGAGGAATTGCGGCTGTGCTTTGAGCAGCGCAGAGAAGAAGTCACCGTGCCTGT
TCTCGTCCTGGCACCAGTTCTCAAAGTACTTGAATATGGGGTAAACCTGGTACTCTGGGTTCGCCTTGAGGTGCCTGAAGATTGTGATGTACCTCCAGTA
CCCAATCTTCTCAGACAGGTAGGTGGCGTAGAAGATGAACTTGGGCTTGAAGAAGGTGTACTTCCTAGCCTTGGTCAAGAACCCCAGGTCCAGCGCCAAG
TTGAAGTCAGACAGCCCCTT