Detailed information on CNT30574876


BLAST search results

BLAST vs Swiss-Prot:
sp|Q5EFU4|CRD1_HORVU, E-value = 5e-62

BLAST vs NONCODE:
NONGMAT001508, E-value = 2e-22

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675451Oryza barthiiSetaria viridis38.0829.493.46107forward
CNT30375469Oryza barthiiArabidopsis thaliana53.0219.184.56149forward
CNT30222759Oryza barthiiHordeum vulgare52.6729.6692.57148forward
CNT3015355Oryza barthiiZea mays96.0910093.7270forward
CNT30342208Oryza barthiiEragrostis tef53.3846.8896150forward
CNT30360756Oryza barthiiLactuca sativa49.4720.5384.17139forward
CNT3036024Oryza barthiiCucumis melo34.888.1785.7198forward
CNT3099688Oryza barthiiOryza rufipogon10060.3100281forward
CNT30115529Oryza barthiiOryza nivara86.8310099.18244forward
CNT30550454Oryza barthiiOryza brachyantha55.8714.398.73157forward

Expression of CNT30574876

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MNLGLKKVYFLALVKNPRSSAKLKSDSPLFK

>peptide 2 (30 aa)
ERQKNRDQSLAFQSLRNCGCALSSAEKKSP*

Sequence

>CNT30574876
CCGAGAGGCAGAAGAACCGTGACCAGAGCTTGGCCTTCCAGTCGTTGAGGAACTGCGGCTGCGCCTTGAGCAGCGCGGAGAAGAAATCACCGTGACGGTT
CTCATCCTGGCACCAGTTCTCAAAGTGCCTGAAGATGGTGATGTACCTCCAGTACCCAATCTTCTCCGACAGGTAGGTCGCGTAGAAGATGAACTTGGGC
TTGAAGAAGGTGTACTTCCTAGCCTTGGTCAAGAACCCGAGGTCCAGTGCCAAGTTGAAATCAGACAGCCCCTTGTTCAAG