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Detailed information on CNT30115390


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30375469Eutrema salsugineumArabidopsis thaliana43.8730.2696.19236forward
CNT30524694Eutrema salsugineumPhaseolus vulgaris18.7735.9484.16101forward
CNT30293788Eutrema salsugineumTriticum aestivum25.2854.487.5136forward
CNT30222759Eutrema salsugineumHordeum vulgare36.0638.8883.51194forward
CNT30311334Eutrema salsugineumCamelina sativa24.9144.9788.81134forward
CNT30264426Eutrema salsugineumBrassica rapa22.323.0394.17120forward
CNT3014813Eutrema salsugineumZea mays25.2846.986.76136forward
CNT30342208Eutrema salsugineumEragrostis tef49.2682.8184.15265forward
CNT30479309Eutrema salsugineumArabidopsis halleri25.4630.5894.89137forward
CNT30363182Eutrema salsugineumSorghum bicolor38.163.8682.44205forward
CNT30595630Eutrema salsugineumOryza meridionalis22.1253.1286.55119forward
CNT30360756Eutrema salsugineumLactuca sativa36.829.2582.32198forward
CNT3036024Eutrema salsugineumCucumis melo37.1716.6781.5200forward
CNT30149182Eutrema salsugineumBrachypodium distachyon47.7774.2882.88257forward
CNT3099936Eutrema salsugineumOryza rufipogon24.1625.986.15130forward
CNT30574872Eutrema salsugineumOryza barthii24.1621.6386.15130forward
CNT30115498Eutrema salsugineumOryza nivara34.9426.7484.57188forward
CNT30557835Eutrema salsugineumPanicum hallii28.6224.9283.77154forward
CNT30550454Eutrema salsugineumOryza brachyantha36.0617.6783.51194forward

Expression of CNT30115390

Peptides detected in this lncRNA

>peptide 1 (69 aa)
AEEAGPELGLPVIEELRLSFHQSREEISMAVLVLAPVLKVLEDWVTLVLRVLLEVSIDCDVSPVPNFLG*

>peptide 2 (54 aa)
MNFGLKKVYFLAFVLVDLGVEKLLHLLKIRRVEPRSQKRLLNLFLRPLLGFRGG*

Sequence

>CNT30115390
GGCAGAAGAAGCGGGACCAGAGCTTGGCTTGCCAGTCATTGAGGAACTGAGGCTGAGCTTTCATCAAAGCAGAGAAGAAATCTCCATGGCGGTTCTCGTC
TTGGCACCAGTTCTCAAAGTACTTGAAGATTGGGTAACATTGGTACTCAGGGTTTTGCTTGAGGTGTCTATAGATTGTGATGTATCTCCAGTACCCAATT
TTCTCGGATAAGTAAGTCGCGTAGAAGATGAATTTCGGTTTGAAGAAAGTGTATTTCCTTGCCTTTGTTCTTGTTGATCTCGGTGTTGAAAAGCTGCTCC
ATCTCCTCAAAATCCGTCGTGTAGAACCTCGGAGTCAGAAGCGACTCCTGAATCTCTTTCTTCGTCCCCTTCTTGGATTTCGAGGTGGCTGACATTCTGA
TCACGGTGGAGAAACGTCGGCCGGAGAGGTATTTGCTCGGGTTAGTGAGCTTTGGGGTTGCGAACTTGGAGATGGGTTTCACTAACGCCATTTCAGCCGC
CATTGGTTGTGAGTTGCAGAAAGCAAGGGAGAGCGAGT