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Detailed information on CNT30149182


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30375469Brachypodium distachyonArabidopsis thaliana65.6129.182.82227forward
CNT30293788Brachypodium distachyonTriticum aestivum51.1670.896.05177forward
CNT30222759Brachypodium distachyonHordeum vulgare54.3437.6895.21188forward
CNT3014813Brachypodium distachyonZea mays51.1661.0393.22177forward
CNT30342208Brachypodium distachyonEragrostis tef74.2880.3191.83257forward
CNT30363182Brachypodium distachyonSorghum bicolor63.2968.2292.24219forward
CNT30595630Brachypodium distachyonOryza meridionalis36.1355.893.6125forward
CNT30360756Brachypodium distachyonLactuca sativa53.4727.3382.16185forward
CNT3036024Brachypodium distachyonCucumis melo24.28783.3384forward
CNT3099936Brachypodium distachyonOryza rufipogon38.1526.2993.94132forward
CNT30574872Brachypodium distachyonOryza barthii38.1521.9693.94132forward
CNT30115498Brachypodium distachyonOryza nivara63.0131.0194.95218forward
CNT30557835Brachypodium distachyonPanicum hallii51.1628.6492.09177forward
CNT30550454Brachypodium distachyonOryza brachyantha63.0119.8595.41218forward
CNT30115390Brachypodium distachyonEutrema salsugineum74.2847.7782.88257forward

Expression of CNT30149182

Peptides detected in this lncRNA

>peptide 1 (75 aa)
SIYLDDDMHVKFFGVQTNSFVECSTLAVIQKKRDQSLAFQSLRNCGCALSSAEKKSPCRFSSWHQFSKYLKMGYT*

>peptide 2 (57 aa)
MPVLVLAPVLEVLEDGVHLILRVRLEVPEDGDIPPVPDLLRQVGGVEDELGLEEGVLP

Sequence

>CNT30149182
GTTCGATTTACCTCGATGATGACATGCATGTCAAATTCTTTGGTGTTCAGACCAATTCCTTCGTAGAATGCAGTACGTTGGCAGTCATTCAGAAGAAGCG
TGACCAGAGCTTGGCCTTCCAGTCGTTGAGGAACTGTGGCTGCGCCTTAAGCAGCGCGGAGAAGAAATCCCCATGCCGGTTCTCGTCCTGGCACCAGTTC
TCGAAGTACTTGAAGATGGGGTACACCTGATACTCCGGGTTCGCCTTGAGGTGCCTGAAGATGGTGATATACCTCCAGTACCCGATCTTCTCCGACAGGT
AGGTGGCGTAGAAGATGAACTTGGGCTTGAAGAAGGTGTACTTCCT