Detailed information on CNT3036024


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9M591|CRD1_ARATH, E-value = 6e-59

BLAST vs NONCODE:
NONGMAT001508, E-value = 4e-83

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675451Cucumis meloSetaria viridis8.6728.5788.46104forward
CNT30640966Cucumis meloNymphaea colorata4.9226.2288.1459forward
CNT30375469Cucumis meloArabidopsis thaliana21.533.0884.11258forward
CNT30524694Cucumis meloPhaseolus vulgaris8.2535.2389.999forward
CNT30293788Cucumis meloTriticum aestivum6.9233.285.5483forward
CNT30222759Cucumis meloHordeum vulgare19.6747.2980.51236forward
CNT30238074Cucumis meloBrassica oleracea7.1732.8284.8886forward
CNT3014813Cucumis meloZea mays8.5835.5285.44103forward
CNT30342208Cucumis meloEragrostis tef20.6777.581.85248forward
CNT30363182Cucumis meloSorghum bicolor6.4223.9989.6177forward
CNT30595630Cucumis meloOryza meridionalis6.9237.0587.9583forward
CNT30360756Cucumis meloLactuca sativa20.6736.6382.66248forward
CNT30149182Cucumis meloBrachypodium distachyon724.2883.3384forward
CNT3099688Cucumis meloOryza rufipogon8.7522.5385.71105forward
CNT30574876Cucumis meloOryza barthii8.1734.8885.7198forward
CNT30115498Cucumis meloOryza nivara2339.2681.52276forward
CNT30550454Cucumis meloOryza brachyantha2325.1480.8276forward
CNT30115390Cucumis meloEutrema salsugineum16.6737.1781.5200forward

Expression of CNT3036024

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MNFGLKNVYFLAFVRNPKSNAKLKSDRPLFKNL*

>peptide 2 (78 aa)
MQPKSQIPMLQQVESSSSSSPMEDHWLCLEQCREEITVPVLILTPIFKVLENGIALELRVGFEMSVNGYVSPVSNFFR*

>peptide 3 (31 aa)
LRPIHYMFVMIFLQTLHNNRLHSFILNILKR*

Sequence

>CNT3036024
CTAAGACCAATTCATTACATGTTTGTGATGATATTTTTACAAACATTACATAACAACAGATTACACTCATTCATACTGAACATACTAAAAAGATAAGCTA
ATTAAGTACAAAAATTTTAATACACAAGTTGAGGCTCAAATTCTGCAAAATCAACAGATCCCGACTCAATTGGAGGCATCAAATATGCAGCCAAAATCTC
AGATACCAATGCTGCAGCAAGTGGAATCCTCTTCAAGTTCTTCACCAATGGAAGATCATTGGCTGTGCCTTGAGCAATGCAGAGAAGAAATCACCGTGCC
TGTTCTCATCCTGACACCAATTTTCAAAGTACTTGAAAATGGGATAGCATTGGAACTCAGGGTTGGCTTTGAGATGTCTGTAAATGGTTATGTATCGCCA
GTATCCAATTTTTTCAGATAAGTATGTAGCATAGAAGATGAACTTTGGCTTGAAAAATGTGTATTTTCTAGCCTTTGTCAGGAATCCCAAGTCCAATGCC
AAGTTGAAATCTGATAGGCCCTTGTTCAAAAACCTGTAGTTAATGGTACATTAGTATAAGAAAATATACGACAGAAACAAATTTAAAGGCATTTTTGTTC
CTTGTTCTAAATCTGTGACTAAGCTTCCAAATCATTTCGAATTGTGCATTCACTTAATATATTACTTTGAACTTATTTCAGATGGTAAACTTTCACGTTT
GTTAGAATTTGGTGCATTAATCTTAAGCACTTTGTGTCTTGCTAACTCTACATAAGAACAAACCATTTTGTTACTCTACGTTTAACGGGGAGAATGTTCT
CCCTGACTTTATGCTTCCTAACTATTTGACTTTTGGTTTTTCTCAATTAAACTAATAGACTAACAATAATTCTATTTGTAGTCTTGTCATTGTTAAAAAT
GTTTTTTTTAGTAAAGATGAAAATTATAATAAACGAGCAAAAATGTAAAAAACTAGTAATATGATGGTCATAGGACGGACCTACGTATTTGAAATTTTGA
ATGTCAAGTGTCCGTATTTGAAATTTTGAATGTCAAGTGTTTCTTGAAATATTAGAATTAGAGGCTAAAATAAGTATTTATACAAAGTTGAAAATAAATA
TGAATGTTCAAGTGTCATATCACATTCAGTAGCATACGTTAATATCAATAAAGGAAGCTTATTTGATGCTTTTGAGGCTATAAAAAAAGTACATACCCAG