Detailed information on CNT3099688


BLAST search results

BLAST vs Swiss-Prot:
sp|Q5EFU4|CRD1_HORVU, E-value = 8e-62

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675451Oryza rufipogonSetaria viridis24.0330.7793.75112forward
CNT30375469Oryza rufipogonArabidopsis thaliana33.2619.8785.16155forward
CNT30222759Oryza rufipogonHordeum vulgare31.7629.6692.57148forward
CNT3015355Oryza rufipogonZea mays57.9410093.7270forward
CNT30342208Oryza rufipogonEragrostis tef32.1946.8896150forward
CNT30360756Oryza rufipogonLactuca sativa29.8320.5384.17139forward
CNT3036024Oryza rufipogonCucumis melo22.538.7585.71105forward
CNT30574876Oryza rufipogonOryza barthii60.3100100281forward
CNT30115498Oryza rufipogonOryza nivara59.4439.499.64277forward
CNT30550454Oryza rufipogonOryza brachyantha48.0720.494.2224forward

Expression of CNT3099688

Peptides detected in this lncRNA

>peptide 1 (30 aa)
ERQKNRDQSLAFQSLRNCGCALSSAEKKSP*

>peptide 2 (50 aa)
MNLGLKKVYFLALVKNPRSSAKLKSDSPLFKNLNSINHADNSVELLTQLS*

Sequence

>CNT3099688
CCGAGAGGCAGAAGAACCGTGACCAGAGCTTGGCCTTCCAGTCGTTGAGGAACTGCGGCTGCGCCTTGAGCAGCGCGGAGAAGAAATCACCGTGACGGTT
CTCATCCTGGCACCAGTTCTCAAAGTGCCTGAAGATGGTGATGTACCTCCAGTACCCAATCTTCTCCGACAGGTAGGTCGCGTAGAAGATGAACTTGGGC
TTGAAGAAGGTGTACTTCCTAGCCTTGGTCAAGAACCCGAGGTCCAGTGCCAAGTTGAAATCAGACAGCCCCTTGTTCAAGAACCTGAACAGCATAAATC
ATGCAGACAATTCAGTTGAATTGCTTACTCAATTGAGTTGAAATGGACGCCCTAAAACTGAAGCTTAAATATTTTCTCTAGTCATGGTACAGTTCAATTT
GAGTTGTAATGGCTGCTTGCAATCACATTGTGTCATTGTGCAAGGAAATAATTTAGAGTGTGTTAC