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Detailed information on CNT30115498


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6SJV8|CRD1_GOSHI, E-value = 2e-78

BLAST vs NONCODE:
NONGMAT001508, E-value = 1e-44

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675451Oryza nivaraSetaria viridis15.9330.7792.86112forward
CNT30375469Oryza nivaraArabidopsis thaliana42.3938.2183.56298forward
CNT30524694Oryza nivaraPhaseolus vulgaris12.2330.683.7286forward
CNT30293788Oryza nivaraTriticum aestivum20.4857.695.83144forward
CNT30222759Oryza nivaraHordeum vulgare34.1448.193.33240forward
CNT30342208Oryza nivaraEragrostis tef39.5486.8893.17278forward
CNT30363182Oryza nivaraSorghum bicolor25.8956.791.21182forward
CNT30595630Oryza nivaraOryza meridionalis15.6549.1199.09110forward
CNT30360756Oryza nivaraLactuca sativa32.2933.5384.58227forward
CNT3036024Oryza nivaraCucumis melo39.262381.52276forward
CNT30149182Oryza nivaraBrachypodium distachyon31.0163.0194.95218forward
CNT3099688Oryza nivaraOryza rufipogon39.459.4499.64277forward
CNT30557835Oryza nivaraPanicum hallii19.6322.3393.48138forward
CNT30550454Oryza nivaraOryza brachyantha61.7439.5394.7434forward
CNT30115390Oryza nivaraEutrema salsugineum26.7434.9484.57188forward

Expression of CNT30115498

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MNLGLKKVYFLALVKNPRSSAKLKSDSPLFKNLNSINHADNSVELLTQLS*

Sequence

>CNT30115498
GGTCTGCCAAAAAAATGCACAGATTGTATCATCAGTGTGGTCATTTCAGTATACAAAAATTAAAAACATTCTCCTAAGCATATAAGTAAAGCATAAAATG
GTCTGCACCCATTGCATAATGAAATTGTTTTAATATTCAGCAATTCTTCTGAAACTGTCTGGACTACAGAAAAGTAGGGCACATAATTAATTTTGTAAAC
AAGAAAAGGAAGTTGATTTTCTTACCTCAATTATCACATGCATGTCGAATTCTTTGGTGTCCAGACCAATCCCTTCATAGAATGTAGTACGTTGGCAATC
ATTTAGGAACTGCGGCTGCGCCTTGAGCAGCGCGGAGAAGAAATCACCGTGACGGTTCTCATCCTGGCACCAGTTCTCAAAGTACTTGAAGATGGGGTAC
ACCTGGTACTCCGGGTTCGCCTTGAGGTGCCTGAAGATGGTGATGTACCTCCAGTACCCAATCTTCTCCGACAGGTAGGTCGCGTAGAAGATGAACTTGG
GCTTGAAGAAGGTGTACTTCCTAGCTTTGGTCAAGAACCCGAGGTCCAGTGCCAAGTTGAAATCAGACAGCCCCTTGTTCAAGAACCTGAACAGCATAAA
TCATGCAGACAATTCAGTTGAATTGCTTACTCAATTGAGTTGAAATGGACGCCCTAAAACTGAAGCTTAAATATTTTCTCTAGTCATGGTACAGTTCAAT
TTG