Detailed information on CNT30675451


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30375469Setaria viridisArabidopsis thaliana29.413.7286.92107forward
CNT30293788Setaria viridisTriticum aestivum20.63085.3375forward
CNT30222759Setaria viridisHordeum vulgare25.2718.4492.3992forward
CNT3014813Setaria viridisZea mays30.2237.9396.36110forward
CNT30363528Setaria viridisSorghum bicolor30.4911.293.69111forward
CNT30595630Setaria viridisOryza meridionalis2540.6294.5191forward
CNT30360756Setaria viridisLactuca sativa27.4714.7782100forward
CNT3036024Setaria viridisCucumis melo28.578.6788.46104forward
CNT3099688Setaria viridisOryza rufipogon30.7724.0393.75112forward
CNT30574876Setaria viridisOryza barthii29.438.0893.46107forward
CNT30115498Setaria viridisOryza nivara30.7715.9392.86112forward
CNT30550454Setaria viridisOryza brachyantha30.7710.292.86112forward

Expression of CNT30675451

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MNLGLKKVYFLALVRNPRSSAKLKSDRPLFKNL

>peptide 2 (86 aa)
TRIEAAANFTKIICDTIQWTLANDLYAIGFISVQLQTLPSAGKPERSLLMQFTVTYMEMPHNKSLPSLMLPKSQYFTDKHKKMQVA*

Sequence

>CNT30675451
ACGCGAATAGAAGCTGCAGCTAATTTCACCAAGATCATATGTGATACAATACAATGGACTTTAGCTAATGATCTGTATGCCATTGGCTTCATATCAGTAC
AGCTTCAGACGCTCCCTTCTGCCGGAAAACCGGAACGCTCACTTCTGATGCAGTTCACTGTCACTTACATGGAGATGCCTCACAACAAAAGCTTGCCGAG
CCTTATGTTGCCGAAGTCTCAATATTTTACAGACAAACACAAGAAGATGCAGGTGGCGTAGAAGATGAACTTGGGCTTGAAGAAGGTGTATTTCCTAGCC
TTGGTCAGGAACCCCAGGTCCAGTGCCAAGTTGAAGTCAGATAGACCCTTGTTCAAGAACCTAG