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Detailed information on CNT30293788


BLAST search results

BLAST vs Swiss-Prot:
sp|Q5EFU4|CRD1_HORVU, E-value = 1e-51

BLAST vs NONCODE:
NONGMAT001508, E-value = 2e-16

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675451Triticum aestivumSetaria viridis3020.685.3375forward
CNT30375469Triticum aestivumArabidopsis thaliana41.613.3385.58104forward
CNT30222759Triticum aestivumHordeum vulgare43.221.6499.07108forward
CNT3014813Triticum aestivumZea mays73.663.4596.2184forward
CNT30342208Triticum aestivumEragrostis tef72.856.8892.86182forward
CNT30363182Triticum aestivumSorghum bicolor73.657.3292.93184forward
CNT30595630Triticum aestivumOryza meridionalis89.610089.29224forward
CNT30360756Triticum aestivumLactuca sativa33.212.2685.5483forward
CNT3036024Triticum aestivumCucumis melo33.26.9285.5483forward
CNT30149182Triticum aestivumBrachypodium distachyon70.851.1696.05177forward
CNT3099936Triticum aestivumOryza rufipogon5627.8995.71140forward
CNT30574872Triticum aestivumOryza barthii56.423.4695.74141forward
CNT30115498Triticum aestivumOryza nivara57.620.4895.83144forward
CNT30557835Triticum aestivumPanicum hallii74.430.193.01186forward
CNT30550454Triticum aestivumOryza brachyantha57.613.1197.92144forward
CNT30115390Triticum aestivumEutrema salsugineum54.425.2887.5136forward

Expression of CNT30293788

Peptides detected in this lncRNA

>peptide 1 (82 aa)
TERQKKRDQSLAFQSLRNCGCALSSAEKKSPCRFSSWHQFSKYLKMGYTWYSGLALRCLKMVYFLALVKKPRSRARLKSDSPL

Sequence

>CNT30293788
ACCGAGAGGCAGAAGAAGCGTGACCAGAGCTTGGCCTTCCAGTCATTGAGGAACTGCGGCTGCGCCTTGAGCAGCGCGGAGAAGAAATCGCCGTGCCGGT
TCTCGTCCTGGCACCAGTTCTCGAAGTACTTGAAGATGGGGTACACCTGGTACTCCGGGTTGGCCTTGAGGTGCCTGAAGATGGTGTACTTCCTAGCCTT
GGTCAAGAAGCCGAGGTCCAGAGCCAGGTTGAAATCGGACAGCCCCTTGT