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Detailed information on CNT30222759

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30675451	Hordeum vulgare	Setaria viridis	18.44	25.27	92.39	92	forward
CNT30375469	Hordeum vulgare	Arabidopsis thaliana	39.88	25.51	85.43	199	forward
CNT30293788	Hordeum vulgare	Triticum aestivum	21.64	43.2	99.07	108	forward
CNT30388932	Hordeum vulgare	Triticum turgidum	30.26	17.52	86.09	151	forward
CNT3015355	Hordeum vulgare	Zea mays	29.66	54.81	93.92	148	forward
CNT30342208	Hordeum vulgare	Eragrostis tef	48.1	75	92.5	240	forward
CNT30363182	Hordeum vulgare	Sorghum bicolor	30.06	46.73	92.67	150	forward
CNT30595630	Hordeum vulgare	Oryza meridionalis	16.03	35.71	96.25	80	forward
CNT30360756	Hordeum vulgare	Lactuca sativa	43.09	31.76	82.79	215	forward
CNT3036024	Hordeum vulgare	Cucumis melo	47.29	19.67	80.51	236	forward
CNT30149182	Hordeum vulgare	Brachypodium distachyon	37.68	54.34	95.21	188	forward
CNT3099688	Hordeum vulgare	Oryza rufipogon	29.66	31.76	92.57	148	forward
CNT30574876	Hordeum vulgare	Oryza barthii	29.66	52.67	92.57	148	forward
CNT30115498	Hordeum vulgare	Oryza nivara	48.1	34.14	93.33	240	forward
CNT30557835	Hordeum vulgare	Panicum hallii	21.64	17.48	95.37	108	forward
CNT30550454	Hordeum vulgare	Oryza brachyantha	48.1	21.86	93.33	240	forward
CNT30115390	Hordeum vulgare	Eutrema salsugineum	38.88	36.06	83.51	194	forward

Expression of CNT30222759

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MLHRVHVYCTTKGHYCHVEQFFRNCLHSVKQPGHACVNRVYKQEKSLHFTS*

>peptide 2 (46 aa)
MHVEFFEKKSPCRFSSWHQFSKYLKMGYTWYSGLALRCLKMVMYLQ*

Sequence

>CNT30222759
ATGCACCAACAGTATCATCAGTAGAGGTCTTGATTTAAGTCGAAGCTTAAATATTGTCATAAGCATTTAAATAAACTATAATGCTTCATAGGGTTCATGT
TTATTGTACTACGAAAGGTCATTATTGTCATGTTGAGCAGTTCTTCAGAAACTGCCTACACTCAGTGAAGCAACCAGGACATGCATGTGTTAATCGAGTA
TACAAACAGGAAAAGTCACTTCATTTTACCTCATAGATGACATGCATGTCGAATTCTTTGAGAAGAAATCACCGTGCCGGTTCTCGTCCTGGCACCAGTT
CTCGAAGTACTTGAAGATGGGGTACACCTGGTACTCCGGGTTGGCCTTGAGGTGCCTGAAGATGGTGATGTACCTCCAGTAGCCGATCTTCTCGGACAGG
TACGTGGCGTAGAAGATGAACTTTGGCTTGAAGAAGGTGTACTTCCTAGCCTTGGTCAAGAACCCGAGGTCCAGAGCCAGGTTGAAGTCGGATAGCCCC