« Back to Oryza meridionalis search


Detailed information on CNT30595630


BLAST search results

BLAST vs Swiss-Prot:
sp|Q5EFU4|CRD1_HORVU, E-value = 6e-45

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675451Oryza meridionalisSetaria viridis40.622594.5191forward
CNT30375469Oryza meridionalisArabidopsis thaliana46.4313.3387.5104forward
CNT30293788Oryza meridionalisTriticum aestivum10089.689.29224forward
CNT30222759Oryza meridionalisHordeum vulgare35.7116.0396.2580forward
CNT3014813Oryza meridionalisZea mays57.1444.1492.97128forward
CNT30342208Oryza meridionalisEragrostis tef57.144092.19128forward
CNT30363182Oryza meridionalisSorghum bicolor55.838.9492125forward
CNT30360756Oryza meridionalisLactuca sativa38.3912.786.0586forward
CNT3036024Oryza meridionalisCucumis melo37.056.9287.9583forward
CNT30149182Oryza meridionalisBrachypodium distachyon55.836.1393.6125forward
CNT3099936Oryza meridionalisOryza rufipogon52.2323.3199.15117forward
CNT30574872Oryza meridionalisOryza barthii52.2319.4799.15117forward
CNT30115498Oryza meridionalisOryza nivara49.1115.6599.09110forward
CNT30557967Oryza meridionalisPanicum hallii57.1425.5591.41128forward
CNT30550454Oryza meridionalisOryza brachyantha44.649.1199100forward
CNT30115390Oryza meridionalisEutrema salsugineum53.1222.1286.55119forward

Expression of CNT30595630

Peptides detected in this lncRNA

>peptide 1 (73 aa)
ELGLPVIEELRLRLEQRGEEITVTVLILAPVLKVLEDGVHLVGRVEDELGLEEGVLPSLGQEPEVQCQVEIRQP

Sequence

>CNT30595630
CAGAGCTTGGCCTTCCAGTCATTGAGGAACTGCGGCTGCGCCTTGAGCAGCGCGGAGAAGAAATCACCGTGACGGTTCTCATCCTGGCACCAGTTCTCAA
AGTACTTGAAGATGGGGTACACCTGGTAGGTCGCGTAGAAGATGAACTTGGGCTTGAAGAAGGTGTACTTCCTAGCCTTGGTCAAGAACCCGAGGTCCAG
TGCCAAGTTGAAATCAGACAGCCC