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Detailed information on CNT30375469


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9M591|CRD1_ARATH, E-value = 5e-81

BLAST vs NONCODE:
NONGMAT001508, E-value = 7e-56

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675451Arabidopsis thalianaSetaria viridis13.7229.486.92107forward
CNT30524694Arabidopsis thalianaPhaseolus vulgaris12.9535.9484.16101forward
CNT30293788Arabidopsis thalianaTriticum aestivum13.3341.685.58104forward
CNT30222759Arabidopsis thalianaHordeum vulgare25.5139.8885.43199forward
CNT3015355Arabidopsis thalianaZea mays17.315085.93135forward
CNT30342208Arabidopsis thalianaEragrostis tef35.1385.6283.58274forward
CNT30363182Arabidopsis thalianaSorghum bicolor22.1853.8982.66173forward
CNT30595630Arabidopsis thalianaOryza meridionalis13.3346.4387.5104forward
CNT30360756Arabidopsis thalianaLactuca sativa31.7936.6383.06248forward
CNT3036024Arabidopsis thalianaCucumis melo33.0821.584.11258forward
CNT30149182Arabidopsis thalianaBrachypodium distachyon29.165.6182.82227forward
CNT3099688Arabidopsis thalianaOryza rufipogon19.8733.2685.16155forward
CNT30574876Arabidopsis thalianaOryza barthii19.153.0284.56149forward
CNT30115498Arabidopsis thalianaOryza nivara38.2142.3983.56298forward
CNT30557835Arabidopsis thalianaPanicum hallii18.3323.1481.82143forward
CNT30550454Arabidopsis thalianaOryza brachyantha38.0827.0582.49297forward
CNT30115390Arabidopsis thalianaEutrema salsugineum30.2643.8796.19236forward

Expression of CNT30375469

Peptides detected in this lncRNA

>peptide 1 (30 aa)
QVNINLLVSSSFTSMMTCISNSFVFNPIPS*

>peptide 2 (41 aa)
MNFGLKKVYFLAFVRKPKSRAKLKSDNPLFKNLPKKVYHQN*

>peptide 3 (33 aa)
MSCFISRHKREDLSHNRVCFLQCHQIKDSKSSQ*

>peptide 4 (41 aa)
MTVLVLTPVLKVLEDWVTLELRVFLEVSVDCDVSPVPDFLG*

Sequence

>CNT30375469
CACAGGTTAATATTAATCTTCTTGTTTCAAGTTCCTTTACCTCGATGATGACATGCATATCGAACTCCTTTGTGTTTAACCCGATACCCTCGTAGAAATT
AGTTCTTTGGCAGTCATTGAGGAACTGAGGCTGAGCTTTCATCAAAGCAGAGAAGAAATCACCATGACGGTTCTCGTCTTGACACCAGTTCTCAAAGTAC
TTGAAGATTGGGTAACATTGGAACTCAGGGTTTTCCTTGAGGTGTCTGTAGATTGTGATGTATCTCCAGTACCCGATTTTCTCGGATAAGTAAGTCGCGT
AGAAGATGAATTTTGGCTTGAAGAAAGTGTATTTCCTTGCCTTTGTCAGGAAACCCAAATCAAGAGCCAAGTTGAAATCAGACAATCCCTTGTTCAAGAA
CCTGCCAAAAAAAGTTTATCATCAAAATTGAAACACTTAGATTAAAAAGAGAGGTCCTTAGTGTTAAGAGATCTTACCCGGCATGTCTTGCTTCATCTCT
AGACATAAGAGAGAAGATCTCAGCCACAACAGGGTTTGTTTTCTGCAATGCCATCAGATCAAAGATTCAAAATCAAGCCAATAAAATGATCCAAAGAAAC
AACAACAAGTCTCACATGTGCTCTAACTTCCACCTAATGAGCATAGCTTCAAGCATAACGTAGACAAGGAACATCAAACCAACAACCACACTTGAAAACT
CATAACAATTGAGACTTGACTATTACTTAAAGCCATATATATTCTTAAATTCTCACCTTGAGTCTTCGACCAAGCTCCTT