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Detailed information on CNT30550454


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6SJV8|CRD1_GOSHI, E-value = 4e-76

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675451Oryza brachyanthaSetaria viridis10.230.7792.86112forward
CNT30523010Oryza brachyanthaSetaria italica7.4727.0695.1282forward
CNT30375469Oryza brachyanthaArabidopsis thaliana27.0538.0882.49297forward
CNT30293788Oryza brachyanthaTriticum aestivum13.1157.697.92144forward
CNT30222759Oryza brachyanthaHordeum vulgare21.8648.193.33240forward
CNT3014813Oryza brachyanthaZea mays13.1149.6695.14144forward
CNT30342208Oryza brachyanthaEragrostis tef25.3286.8892.45278forward
CNT30363182Oryza brachyanthaSorghum bicolor16.5856.791.21182forward
CNT30595630Oryza brachyanthaOryza meridionalis9.1144.6499100forward
CNT30360756Oryza brachyanthaLactuca sativa22.536.4883247forward
CNT3036024Oryza brachyanthaCucumis melo25.142380.8276forward
CNT30149182Oryza brachyanthaBrachypodium distachyon19.8563.0195.41218forward
CNT3099688Oryza brachyanthaOryza rufipogon20.448.0794.2224forward
CNT30574876Oryza brachyanthaOryza barthii14.355.8798.73157forward
CNT30497686Oryza brachyanthaDigitaria exilis7.4723.0395.1282forward
CNT30115498Oryza brachyanthaOryza nivara39.5361.7494.7434forward
CNT30557835Oryza brachyanthaPanicum hallii12.5722.3394.2138forward
CNT30115390Oryza brachyanthaEutrema salsugineum17.6736.0683.51194forward

Expression of CNT30550454

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MNLGLKKVYFLALVKNPRSSAKLKSDSPLFKNLDSTNHDGNSDNCLLNFS*

Sequence

>CNT30550454
TGCAAAAATATGCACCGGATACATCATCAGCAGCTGTCTTAAGATACACAGATCTTAAATATTCTCCTGACCCCTAAACAGTAAAGTTTAAAAATGGTAT
GTAGCCATTTCTTGAGGACAATGTTTCAGTGTTCAGCAATTCTTTCGGAATTGTCTGAACTACAGTAAAAAAAGATTGCCTAAGTAAGAAAAGGCGGTTA
ATTTTTCTTACCTCAATGATCACATGCATGTCGAATTCTTTGGTGTCCAGGCCAATTCCTTCATAGAATGCAGTGCGCTGGCAATCATTTAGGAACTGCG
GCTGCGCCTTGAGCAGCGCGGAGAAGAAATCGCCGTGCCGGTTCTCATCCTGGCACCAGTTCTCGAAGTACTTGAAGATGGGGTACACCTGGTACTCCGG
GTTCGCCTTGAGGTGCCTGAAGATGGTGATGTACCTCCAATACCCAATCTTCTCCGACAGGTAGGTCGCGTAGAAGATGAACTTGGGCTTGAAGAAGGTG
TACTTCCTGGCCTTGGTCAAGAACCCGAGGTCCAGTGCCAAGTTGAAATCAGACAGCCCCTTGTTCAAGAACCTGGACAGCACAAACCATGATGGCAATT
CAGATAACTGCTTACTCAATTTTAGTTGAAATGGAAGCATCAAAAGCTTAAACTTTTTTTCTTTCTAGCCACACCACAGTTCAATGTGAGTTGCAAACTT
TGCAATGGCTGCTCGCAATCACACTGTGTGAAGGAATAAGTTTAGAGTGCGTTGCTACATACCCAGCGTGACGGGCCTCATCCCTGGACATGAGCGAGAA
GATCTCGGCCACCACCGGCCGCTCCATCTCGTCGAAGTCGGTGGTGTAGACCCGCGGCGTCAGCAGCGTCTCCTGGATCTCCGTCTTCCCGCGCTTCTTG
GCCGCGGGCTTCGCGCCCGCGGCCGTCCCCGACGACGACGCCGCCACGCGGAACCGCACGACGCGCCGCCCGAGGGCGGCAGCGGCCGAGGGTGCGACGC
GGGGCCTGGCGGAGGCGGCGTGGCGGCGCATTGCCGCCGGGTTGAGGAGGGAGAGGTCCATGGCGGCGGAGGATGCCATTTGGTCGAACACCTTGGCG