« Back to Aegilops tauschii search


Detailed information on CNT30436840


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672312Aegilops tauschiiSetaria viridis45.6840.1385.95185forward
CNT30520284Aegilops tauschiiSetaria italica45.6823.2790.27185forward
CNT30513329Aegilops tauschiiJuglans regia22.4714.1785.7191forward
CNT30386911Aegilops tauschiiTriticum turgidum99.0185.6898401forward
CNT30562752Aegilops tauschiiActinidia chinensis22.727.2784.7892forward
CNT30454075Aegilops tauschiiSaccharum spontaneum46.4220.5986.17188forward
CNT30131950Aegilops tauschiiLolium perenne101.2380.0884.39410forward
CNT30338967Aegilops tauschiiEragrostis tef46.4238.5287.23188forward
CNT30620951Aegilops tauschiiCajanus cajan36.7914.3381.21149forward
CNT30328621Aegilops tauschiiAsparagus officinalis15.821.4887.564forward
CNT30147796Aegilops tauschiiBrachypodium distachyon34.3235.0194.96139forward
CNT30556512Aegilops tauschiiPanicum hallii46.4238.7692.02188forward

Expression of CNT30436840

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MYPITSTSIQISVVSVNGSGCPRYDDPSTSS

>peptide 2 (67 aa)
LPLVHILQITKSQQLSYVIRPALINKGSLRYPLIHHSSYKTKARSLHGRAFVHFAAELTEIARPPTT*

>peptide 3 (56 aa)
VTIGSYFTNHQVPAALLCDQTCINQQRIFAIPSHPSLVIQNQSTFVTRTRVRPFCC*

Sequence

>CNT30436840
GTTACCATTGGTTCATATTTTACAAATCACCAAGTCCCAGCAGCTCTCCTATGTGATCAGACCTGCATTAATCAACAAAGGATCTTTGCGATACCCTCTC
ATCCATCACTCGTCATACAAAACCAAAGCACGTTCGTTACACGGACGCGCGTTCGTCCATTTTGCTGCTGAGCTGACAGAAATTGCTCGACCACCGACCA
CTTAAGAGGAACCCAAGGTGTCGAAGATGGTGGTGTGCAGCGGGTCGCTGAGGTGGCCACCGGGGTAGAGCCTCCTCTCCGGGTCCAGCTCCGCGTTGCG
CTGGAACTCGATGTACCCGATCACCAGCACCTCGATCCAGATCAGCGTGGTGAGCGTGAACGGCAGCGGCTGCCCCAGGTACGACGACCCGTCCACCAGC
TCCAC