Detailed information on CNT30312132


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316024Camelina sativaCorylus avellana59.147.5881.98383forward
CNT30516858Camelina sativaJuglans regia56.3385.0881.92365forward
CNT30376525Camelina sativaArabidopsis thaliana91.5177.5290.22593forward
CNT30500604Camelina sativaCoffea canephora61.8865.282.04401forward
CNT30616442Camelina sativaSesamum indicum72.3845.181.24469forward
CNT30267763Camelina sativaChenopodium quinoa56.3352.3781.37365forward
CNT30489068Camelina sativaOlea europaea51.2367.2182.23332forward
CNT30234460Camelina sativaBrassica oleracea88.2781.3786.36572forward
CNT3076593Camelina sativaBrassica juncea60.4971.7989.54392forward
CNT30263540Camelina sativaBrassica rapa99.5410086.36645forward
CNT30620207Camelina sativaCajanus cajan85.3425.7380.29553forward
CNT30410142Camelina sativaPapaver somniferum46.645.981.13302forward
CNT30705862Camelina sativaPrunus avium103.0962.979.34668forward
CNT3035160Camelina sativaCucumis melo36.5747.0282.7237forward
CNT30584450Camelina sativaEchinochloa crusgalli42.4436.7281.82275forward

Expression of CNT30312132

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MLDCKMAMLDCKKERLDCMQVMLGCKQAKSGCNLAMSGCS*

>peptide 2 (67 aa)
MTGYSLEMKKAKRPFRQHMEKTVHLTLATNAYLDSTGSSGTSCLHGKECLILVNEQESFQILDHPYS*

Sequence

>CNT30312132
GGGGCTGTATGCAGGTGAAGTAGGACTATAAGATGGTGATGTGGGACTATAGGATGGTGAGGTAGGGCTGTAAGAAGGCGATGTTGGACTGTAAGATGGC
GATGTTGGACTGTAAGAAGGAGAGGTTGGACTGTATGCAGGTGATGTTGGGCTGTAAGCAGGCGAAGTCGGGCTGTAACTTGGCGATGTCGGGCTGTAGC
TAGGAGACGTTGGACTGTAGCTTGGAGACGTTGGACTGTAGCTTGGAGACGTGGGGCTGTAGCTCGGAGAGGTGGGAGAATAGGAAGGACTTGTAGGAGA
ATAAGCAGGGCTTGTTGGACTATAGCCAGGAGAACTGGGACTGTAGGTAGGCGAAGTGGGACTATAACCGGGAGAAGTCGGGCTATATCCAGGAGATGAC
GGGCTATAGCCTGGAGATGAAGAAGGCGAAAAGGCCATTCCGCCAACATATGGAGAAAACTGTGCATCTGACATTGGCGACAAACGCATATTTGGACTCA
ACAGGTAGTTCGGGGACATCATGCCTTCATGGTAAGGAGTGCCTGATATTGGTGAACGAGCAGGAGTCATTCCAAATTCTAGACCATCCATATAGCTAGG
GAGCTGGAGTTCAATAGCATTCTTCAGCATCTCATCATTCAGATACAG