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Detailed information on CNT30616442

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSTUT001430, E-value = 8e-41

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30523536	Sesamum indicum	Setaria italica	31.92	58.76	80.72	332	forward
CNT30376525	Sesamum indicum	Arabidopsis thaliana	52.88	71.9	81.45	550	forward
CNT3091192	Sesamum indicum	Solanum tuberosum	56.73	85.14	78.98	590	forward
CNT30312132	Sesamum indicum	Camelina sativa	45.1	72.38	81.24	469	forward
CNT30596739	Sesamum indicum	Oryza meridionalis	26.44	42.31	81.45	275	forward
CNT30410142	Sesamum indicum	Papaver somniferum	41.54	65.65	80.56	432	forward
CNT30705866	Sesamum indicum	Prunus avium	56.15	78.28	79.28	584	forward
CNT30577473	Sesamum indicum	Oryza barthii	26.44	50.46	81.09	275	forward

Expression of CNT30616442

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MQDLLGYIQGKWGCNQEKWGYNQEMMGCIQERTGCNLEMM*

>peptide 2 (60 aa)
MTEKLGCMMERWDCKKVRLGCKMERLGCKRVTLGCKRVKWGCKQGMLGYSSEMSDCNLEM*

Sequence

>CNT30616442
CCTGAACTTCCCAACTAACGTCTTTGGCCATTTGGAAAGTTAATTTGACAATGATGATATACTCGAATTAATCAACTTGAAGCCAGATTGGATTATTAGA
ATCTTGAAGAATAAATAAGGCCCCTTCTAACTATAAAATGGATTCTCCTTAGAAATCAACTAGCTATATAGTACATTAAAGACTGTTCAGACAATCAATG
ATGAGAAAAGTTAAGGTGACCAAGTTGGAGCATTTCAATTTCTTTTACTCCTAGAGCAAGTTCCACAGAGACTCTCACTGGGAAAATTGACATAATGAAT
TTACCTGCTTGGGCTATAACTTGGACTAGATGGAGAATACGATGGAGATGTTGGAGAATATGAAGGTGAGATCTTTGGACTTGTAGGTGAATATGCAAGA
GAAGGGCTGTATCTTGCTGAAGGATTGTAACTTGGAGATGTAGGGCTATAACTTGGTGAGGTAGGACTGTAACTTGGAGAGGTTGGGCTATAACCAGGGG
AGGTCGGGCTGTAGGCAGGTGAGGTTGGGCTATATGACGGAGAAGTTGGGCTGTATGATGGAGAGGTGGGACTGTAAGAAGGTGAGGTTGGGCTGTAAGA
TGGAGAGGTTGGGCTGTAAGAGGGTGACGTTGGGCTGTAAGAGGGTGAAGTGGGGCTGTAAGCAGGGGATGTTGGGCTATAGCTCGGAGATGTCGGACTG
TAACTTGGAGATGTAGGACTATAACTTGGTGAAGTCGGACTATAGCTAGGAGAAGTTGGGCTGTAGGTTGGAGAAGTAGGTGAGTAGGATGGGCTAGTTG
GAGAATATGCAGGACTTGTTGGGCTATATCCAGGGGAAGTGGGGCTGTAACCAGGAGAAGTGGGGCTATAACCAGGAGATGATGGGCTGTATCCAGGAGA
GGACGGGCTGTAACCTGGAGATGATGTAGGAGAGAAGGCCATTCCACCAACATAAGGAGAAAACTGGGCATCTGTAACAGGAGATAACCGCAGATTTGGG
CTGAGCAAATAACTTGGTGACATCATGCCGTCATGATACG