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Detailed information on CNT30631858


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673634Vigna unguiculataSetaria viridis34.672.4389.03155forward
CNT30521379Vigna unguiculataSetaria italica34.624.6889.03155forward
CNT30304884Vigna unguiculataTriticum aestivum29.9129.0794.03134forward
CNT3074265Vigna unguiculataBrassica juncea27.2318.5192.62122forward
CNT30474933Vigna unguiculataSaccharum spontaneum34.624.5690.97155forward
CNT3011199Vigna unguiculataZea mays40.6230.4987.36182forward
CNT30718760Vigna unguiculataMalus domestica golden31.738.5984.51142forward
CNT30368761Vigna unguiculataSorghum bicolor34.68.492.26155forward
CNT30573246Vigna unguiculataVitis vinifera45.5428.1491.67204forward

Expression of CNT30631858

Peptides detected in this lncRNA

>peptide 1 (38 aa)
HRITGYLISLTLTIHIWQSTQTDNTLTPPTSNSISTTS*

>peptide 2 (42 aa)
PPYNRLSYFINTHHPYLAKYTDRQHLNTTYIQFHQHHIIKII*

Sequence

>CNT30631858
CCACCGTATAACAGGCTATCTTATTTCATTAACACTCACCATCCATATCTGGCAAAGTACACAGACAGACAACACCTTAACACCACCTACATCCAATTCC
ATCAGCACCACATCATAAAAATTATATAATCTCAATTAAAAAAAAAAAAAAGAAAGCCAAAAACCGTTACCGAAACCCTAATATTTCAAATCTTATCGAT
ATCCTCATCCTCGAACTCGATATAATCATTGCCAGCGCCGATACCCTCGTTGAGCCTGGTGCTATCAGGAAGCTCACCGTAGGCCTTGAGGAGACGAGCC
TCGTCCGGCATGTACTTCAGGATGACGTCAGCCTTGTCGTCCTGGTAGTCGCGAAGGCCGACGAGGATGATGTCGCCGGCGGCGATCCAGACCTTCTTGT
GCATCTTGCCTCGGATGTGGCAGAGCCGCTTGGTTCCGTCGATGCACA