Detailed information on CNT30673634


BLAST search results

BLAST vs Swiss-Prot:
sp|P47815|IF1A_WHEAT, E-value = 2e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521379Setaria viridisSetaria italica74.325.32100159forward
CNT30631858Setaria viridisVigna unguiculata72.4334.689.03155forward
CNT30304884Setaria viridisTriticum aestivum64.4929.9394.93138forward
CNT30474933Setaria viridisSaccharum spontaneum74.325.296.86159forward
CNT3011199Setaria viridisZea mays73.8326.4794.94158forward
CNT30368761Setaria viridisSorghum bicolor74.38.6295.6159forward
CNT30573246Setaria viridisVitis vinifera61.6818.2188.64132forward

Expression of CNT30673634

Peptides detected in this lncRNA

>peptide 1 (70 aa)
ELPVGLEQARLVVHVLENDVGLIVLVVAEANEDDVARRDPDLLVHLAPDVAEAREMEVGKGALCGLRSWGG

>peptide 2 (37 aa)
MSPAAIQTFLCILPRMWQRRARWRWGKGRCAACGRGVV

Sequence

>CNT30673634
GAGCTCCCCGTAGGCCTTGAGCAGGCGCGCCTCGTCGTTCATGTACTTGAGAATGACGTCGGCCTTATCGTCCTGGTAGTCGCGGAGGCCAACGAGGACG
ATGTCGCCCGCCGCGATCCAGACCTTCTTGTGCATCTTGCCCCGGATGTGGCAGAGGCGCGCGAGATGGAGGTGGGGAAAGGGGCGTTGTGCGGCTTGCG
GTCGTGGGGTGGTT