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Detailed information on CNT30583144


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 2e-103

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30303678Echinochloa crusgalliTriticum aestivum25.0743.2488.54288forward
CNT30441596Echinochloa crusgalliAegilops tauschii40.9163.8685.53470forward
CNT30474763Echinochloa crusgalliSaccharum spontaneum50.1365.994.97576forward
CNT30140296Echinochloa crusgalliLolium perenne50.359.5985.12578forward
CNT30340478Echinochloa crusgalliEragrostis tef38.6452.5491.89444forward
CNT30595666Echinochloa crusgalliOryza meridionalis42.0438.7686.96483forward
CNT30557526Echinochloa crusgalliPanicum hallii40.7351.3295.73468forward

Expression of CNT30583144

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MNTIMHDATRLKPTVHQPAASMHMIEQRHIIIMYVSLPLHSNIMQ*

>peptide 2 (36 aa)
MASMASLPFLISLSLSSFISFSVLPNPSGLKSGPPG*

Sequence

>CNT30583144
CCATGTGCAATGTCTCAATTAACAGGATCGATTACTAATTTGTTACAAGCAGCTAGCGTGCAGGCCGGCCAGCGATATATATGAATACAATCATGCATGA
TGCAACACGCCTCAAACCCACTGTCCATCAGCCAGCAGCCAGCATGCATATGATCGAACAACGACACATCATCATCATGTACGTCTCGCTCCCACTACAC
AGCAATATAATGCAATAATCCTCTAGTGGAACTTGAGGCTGGTGAGGACGTTGTTGTTGACTGGGTCTGCCAGGTGGTCTAGCAGGTTCTGGAACGGGCC
GACGCCGGTGACGAGGCCCTGGATGAAGTAGCCGAGGATGGCGAGCATGGCGAGCCTGCCGTTCTTGATCTCCTTGAGCTTGAGCTCCTTCATCTCCTTC
TCCGTCTTGCCGAACCCTAGCGGGTTGAAGAGCGGGCCGCCGGGGTAGGACGGGTCGCCGGAGCCGCCGAGGAACTTCTCGAGGCCGAGGAAGTACTGCT
TGCCCATGGACCCCGGGTTGTACCAGTCCTGGAGGCGGCGGTGCTCGGCGAAGCCCATGAGCGCCATGTTGAAGACGAAGAGCGTGTAGGAGTCGGCCCA
GTAGTCGTAGGTGCCCGCCGGCGGGATCACGCCCGTCTTGAACCACGGCAGCGCCGTCTCCGCCGGGATGATGCCCAGCTTGCCGAAGATCTCGGGGGCG
ATGGCGCCGAACGCGCCGAGCATGGCGAACCGCCCGTTGATCACCTCGCCGTAGGCCAGCCACTTGGGCTCGATGAAGCCGCCGGTGCCCTCGGGGTAGG
AGAGGGACTGCTTGGACGCGAACCACAGCTGCCTGTCGGCGCCTTGCTGCAAATAAAAGAAAAGAATTGATCTATCAGTTGCTTGCTCAGGAGGATGGTG
AGCTAGCTAGTGAGCTCGAGCAGCGAGATTGAAGGAAGAAGGTGAGCGGCGGCAGAGACCTTGGCCGGAGGGCTGGAGCTGGCCCTGACGACGAAGGGCG
CCTTCCTGGCAGACGACCGGGAGACGGCCGACTGGACGGGGCGGCCGAGAAGCTGGCGCCCGGAGAGGAGAGCCTGAGCCGCCATGGATCACGTACGCTA
GCTTGTTGCTTGCTTCCGACAAGGCGCGCTGCTGCTGCGGTATCTGCGG