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Detailed information on CNT30628528


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ATM0|TIP12_MAIZE, E-value = 2e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30373597Vigna unguiculataArabidopsis thaliana20.0728.6282.02178forward
CNT30618415Vigna unguiculataSesamum indicum23.4533.3380.77208forward
CNT30727222Vigna unguiculataCorchorus capsularis33.3755.9581.08296forward
CNT30381982Vigna unguiculataManihot esculenta12.8522.9485.96114forward
CNT30524765Vigna unguiculataPhaseolus vulgaris40.3644.6494.41358forward
CNT30712649Vigna unguiculataGlycine max23.2228.6595.15206forward
CNT3096857Vigna unguiculataSolanum tuberosum7.6724.3788.2468forward
CNT30296934Vigna unguiculataTriticum aestivum20.5233.8381.32182forward
CNT30392788Vigna unguiculataTriticum turgidum20.5213.9881.32182forward
CNT30568703Vigna unguiculataActinidia chinensis28.0715.0380.72249forward
CNT3084498Vigna unguiculataVigna radiata45.2137.0697.76401forward
CNT30146630Vigna unguiculataMedicago truncatula22.7745.9184.16202forward
CNT30242094Vigna unguiculataAvena sativa11.3927.4584.16101forward
CNT30662885Vigna unguiculataTriticum dicoccoides6.224.1289.0955forward
CNT3075983Vigna unguiculataBrassica juncea25.2531.9581.25224forward
CNT301194Vigna unguiculataZea mays11.3920.2486.14101forward
CNT30643380Vigna unguiculataCannabis sativa12.5123.5781.98111forward
CNT30322744Vigna unguiculataAsparagus officinalis7.8920.719070forward
CNT30575580Vigna unguiculataOryza barthii821.1988.7371forward
CNT30176366Vigna unguiculataVigna angularis44.3182.0598.73393forward
CNT3050751Vigna unguiculataCucumis sativus30.7827.7480.59273forward

Expression of CNT30628528

Peptides detected in this lncRNA

>peptide 1 (35 aa)
TEASVKWYIQPEPNNDTLSNGGPGEKERDGERMHK*

>peptide 2 (35 aa)
MLAPTETATKRPNAWAMEAEMSPAGVAAPLSVSLL*

Sequence

>CNT30628528
TGACAGAAGCATCAGTGAAATGGTACATTCAGCCAGAACCCAATAATGATACATTATCCAATGGTGGACCAGGTGAGAAAGAGAGAGACGGAGAGAGGAT
GCACAAATGATGATAATTTAACTTAAAAGGAGAACATGATCATCAACCATCCAACCAAAGATCAACCAACGGCCACCGATTCAACACGAAAGGAACAACC
CGCGAAAGTAGAATGAAGAAAAACACAAGGGAAAAAACATACACAGATCGAAGAGAAATTCAGTAATTGACAATTTTTTTTTTGCTTATTTTTGTGATTT
CTGGGTCTAGTAGTCAGTGGTTGGGAGCTGCTCGTGGGTGTGGCTGATGAAGACAACCTCGTAGATGACCCCAGCGAGCCCACCACCGATGAGAGGGCCG
ACCCAGTAGATCCAGTTGTTGTCCCAGGTCCAGCTAACGACGGCAGGTCCGAATGTGACGGCAGGGTTCATGGCTGCTCCGGAGAAGGCCAGGAGGAGGG
AGGTGATGTTACCTCCGACGAAGGCGCCGAAGGTGACGGCGGGGTTCACGTGACCTCCGGAGATGTTGGCGCCGACGGAGACGGCGACAAAAAGGCCGAA
TGCGTGGGCGATGGAGGCGGAGATGAGTCCGGCAGGTGTGGCGGCGCCGTTGTCAGTGAGCTTGTTGTAGGCGATGCCGGAGCCTGAGCCGGCGAACACG
AAGATGAGGGTGGAGATGAACTCAGCCAAAGCCGCCTTCAACGTGTCGGGGTGAGTGGCCTCCTCGGGCCTTCCGACGGCGATGTTTCTGATCGGCATCT
TCAATCGACGGTGGTGATGATTACGACTGGTGAAAGATGAAGTGAACACCGAGATCACTCACTCAGATCACTCTCTGTTTCGCTGCC