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Detailed information on CNT30520776


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DKY4|METK1_ORYSJ, E-value = 1e-89

BLAST vs NONCODE:
NONPOPT000587, E-value = 1e-38

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3047443Setaria italicaPrunus dulcis72.6640.9981.8489forward
CNT30218668Setaria italicaKalanchoe fedtschenkoi36.5563.5783.74246forward
CNT30597163Setaria italicaOryza meridionalis29.5733.596.48199forward
CNT3024331Setaria italicaPopulus trichocarpa51.5633.2780.69347forward
CNT30101681Setaria italicaOryza rufipogon54.0914.2191.48364forward

Expression of CNT30520776

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MIARGRSRITTQKPQNMISAADQKLLLKGRLRQKASPT*

>peptide 2 (42 aa)
MMIMPGLKSKFSLIILRISLSGIVPVPYVSTNTERGSGTPMA*

>peptide 3 (46 aa)
MTKRPDGLRWKMVFSSRYCSGMTGLMTCSLRSAAISSLVTVSSCWVE

Sequence

>CNT30520776
TTCCTCCTCTAGGTAAATAACCAGACACAGTAATACCCTCACAAGTACCACTTATTAGGACAGTACAATACAAATGATAGCAAGGGGCAGATCAAGAATC
ACAACACAGAAGCCACAAAACATGATAAGCGCAGCAGACCAAAAGCTTCTTCTCAAAGGGCGCCTTAGGCAGAAGGCTTCTCCCACTTGAGGGGCTTCAC
CACCTCCCAGGTGAAGTCAGGGTCGTCCCTTCCGAAGTGACCGTAGGCAGCTGTCTTGAGGTAGCGCCCGTTGCCGCCTTTCTTGAGGTCAAGGTTGATG
ATGATCATGCCAGGCCTGAAGTCGAAGTTCTCCTTAATAATCTTGAGGATCTCCTTGTCGGGGATCGTGCCAGTGCCATATGTGTCAACAAACACGGAGA
GGGGCTCAGGCACACCGATGGCATAGGAGACCTGGACGATGGCGCGGCGAGCAAGGCCATTAGCGACAATGCTCTTGGCAGCTTGCCTGGCAATGTAGGC
TCCACTGCGGTCAACCTTGGTTGGGTCCACCGATGACAAAGCGACCAGATGGGTTAAGGTGGAAGATGGTCTTCTCGTCAAGGTACTGCTCAGGGATGAC
AGGCTTGATGACATGCTCCTTGAGGTCAGCGGCAATCTCATCGTTGGTGACTGTCTCGTCGTGCTGGGTAGAG