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Detailed information on CNT30303722


BLAST search results

BLAST vs Swiss-Prot:
sp|Q4LB22|METK3_HORVU, E-value = 2e-89

BLAST vs NONCODE:
NONPOPT000587, E-value = 6e-25

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674842Triticum aestivumSetaria viridis37.9539.5290230forward
CNT30522677Triticum aestivumSetaria italica63.743.5289.38386forward
CNT30641080Triticum aestivumNymphaea colorata49.1733.384.9298forward
CNT30188823Triticum aestivumSecale cereale56.9340.6898.26345forward
CNT30225924Triticum aestivumHordeum vulgare5053.8297.69303forward
CNT30508528Triticum aestivumSolanum lycopersicum21.1224.6685.16128forward
CNT30441436Triticum aestivumAegilops tauschii40.147.9399.59243forward
CNT30667060Triticum aestivumTriticum dicoccoides50.8348.596.43308forward
CNT3014405Triticum aestivumZea mays47.0352.7887.72285forward
CNT3066706Triticum aestivumLeersia perrieri34.4961.4785.17209forward
CNT30686069Triticum aestivumTriticum urartu45.7132.55100277forward
CNT30363315Triticum aestivumSorghum bicolor51.3237.4788.75311forward
CNT3024331Triticum aestivumPopulus trichocarpa59.2434.4279.11359forward
CNT30148817Triticum aestivumBrachypodium distachyon55.9429.3391.74339forward
CNT30574675Triticum aestivumOryza barthii28.8838.888175forward
CNT30116702Triticum aestivumOryza nivara3319.4784.5200forward
CNT30594881Triticum aestivumEragrostis curvula13.722.4991.5783forward

Expression of CNT30303722

Peptides detected in this lncRNA

>peptide 1 (30 aa)
DVECFFLLPRSKRIPPLSNLRGSRPRITPM*

>peptide 2 (39 aa)
MNLFPPFFKSRLMLIIPGLKSKFSFTSLRISLSGILPVP*

>peptide 3 (88 aa)
MLLGRCLVELEGLHHLPGEVGIITAKVTVSSGLDEPVSTFLQVQVDADHPGPEVKVLLHELEDLPVGDLAGAVGVDEHRQRLRHTDGV*

>peptide 4 (34 aa)
CRMLLLTSQEQKDPAFVELERQQTKNNPNVMSCS*

Sequence

>CNT30303722
GATGTCGAATGCTTCTTCTTACTTCCCAGGAGCAAAAGGATCCCGCCTTTGTCGAACTTGAGAGGCAGCAGACCAAGAATAACCCCAATGTGATGTCTTG
TTCTTAGGCAGATGCCTTGTCGAACTTGAGGGGCTTCACCACCTCCCAGGAGCAACATGATCCCGTCTTGACGAACTTGAGAGGCGGCAGACCAAGAGAA
TGCCATGCTCTTAGGCAGATGCCTTGTCGAACTTGAGGGGCTTCACCACCTCCCAGGTGAAGTCGGCATCATCACGGCCAAAGTGACCGTAAGCAGCGGT
CTTGATGAACCTGTTTCCACCTTTCTTCAAGTCCAGGTTGATGCTGATCATCCCGGGCCTGAAGTCAAAGTTCTCCTTCACGAGCTTGAGGATCTCCCTG
TCGGGGATCTTGCCGGTGCCGTAGGAGTCGACGAACACAGACAAAGGCTCAGGCACACCGATGGCGTATGAGATCTGCACAATGCAGCGGCGTGCGAGGC
CGCTGGCGATGATGCTCTTGGCGGCCTGCCTGGCAATGTAGGCGCCACTGCGGTCGACCTTGGTTGGGTCCTTGCCAGAGAAGGCACCGCCGCCGTGGGC
TCCCCA