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Detailed information on CNT30540884


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 8e-78

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30238548Brassica napusBrassica oleracea87.6190.6397.51764forward
CNT30264666Brassica napusBrassica rapa75.874.94100661forward

Expression of CNT30540884

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MKIISVELEAGQDIVVDWIRQMIKKVLVWPHTGY*

Sequence

>CNT30540884
CTCAGATTTATATTTATTTGAGATGAGTACTTTTCAAGCACCACAGGCAAATATTCGACAATAATCTTTTAAATATGTAACTGACTTCCTTGGTGATTGG
AAAACCCAACTATTAATCCTAGAAGTTGTTCTTTTTGGCCATTGACATTTTCATATCTTACAAAGATATAATATGTTTACAAAGGGTGGTACAATACGAA
GACTGTAGGATACAAGAGAATGAGAGTCCAACATAAAACACATGGGATGATATGAAGATCATCTCAGTGGAACTTGAGGCTGGTCAGGACATTGTTGTTG
ACTGGATCCGCCAAATGATCAAGAAGGTTCTGGTATGGCCCCACACCGGTTACTAGTCCTTGCACAAAATAGCCTAGGATTGCGAGCATAGCCAGTCTAC
CGTTCTTGACCTCCTTGAGTTTCAACTCCTTCATTGACTTCTCGTCTTTCCCAAACCCAAGAGGGTTAAAGAAAGGTCCCCCGGGGTAAGACGGGTCACC
CGAACCGGCAAAACCTTTCTCTAAGCCCAAGAAGTACTGTTTGCCCATTGATCCTGGGTTGTACCAGTCCTGCAACCTCCGGTGCTCAGCAAATCCCATC
AAAGCCATCTCGAGAACAAAGAGTGTGTAAGGGTCTGCCCAGTAGCTGTACGTCCCTGCAGGTGGAGTTGAGGCAGCCTTAACAACAAAGGAAGTCTTCC
TCACGGACACAGCTGGTTTTGTGCCGAATATTTGTCTAGCGGTCTGAACAGAGGAGGTAAGTGAAGAAGACACAAGGGCTTGTGCAGCCATTTTAACTCT
AGTCCTTGAACTCTTCGCTTGTGTCACCAAGAGATGATGATGATGGTTCAGTTATGGTCTGCAAGACAGTGC