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Detailed information on CNT30359023


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 2e-78

BLAST vs NONCODE:
NONBNAT006830, E-value = 4e-47

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30486017Lactuca sativaOlea europaea74.3839.6481.89392forward
CNT30540891Lactuca sativaBrassica napus73.0652.680.26385forward
CNT30238548Lactuca sativaBrassica oleracea73.6246.0381.19388forward
CNT30145920Lactuca sativaMedicago truncatula74.3851.5879.85392forward
CNT3082002Lactuca sativaBrassica juncea73.6253.2280.15388forward
CNT30259051Lactuca sativaBrassica rapa73.6248.5680.67388forward
CNT30611624Lactuca sativaArabis alpina57.6930.1381.91304forward
CNT30624860Lactuca sativaDaucus carota63.9539.0581.31337forward
CNT30725047Lactuca sativaLupinus angustifolius61.2940.4380.8323forward

Expression of CNT30359023

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MPGHPTLKNLSPTPRSIASPLTLGYTSLGVFYALRNPSTPFPIQIG*

>peptide 2 (43 aa)
MESLVELEASQDIVVDRISQMVQQVLERSNPGHQTLNEVTQDC*

Sequence

>CNT30359023
AGTAGCAACAAGGTTTCCGTTATATATCATTAATTTTGTTACAAATTAATAATAGTATTCCGAAGAAATAGATCGATCTGCACATGATATTACATATGAT
GTAGGAAAGAAAATGGAGAGTCTAGTGGAACTTGAGGCTAGTCAAGACATTGTTGTTGACAGGATCAGCCAAATGGTCCAGCAGGTTCTCGAAAGGTCCA
ACCCCGGTCACCAAACCCTGAATGAAGTAACCCAAGATTGCTAACATAGCCAATCTTCCATTCTTGATTTCTTTTAGCTTCAGTTCCTTCATTGACTTCT
CATCTTTCCCGAACCCGAGTGGGTTAAAGAACGGCCCACCTGGGTATGCCGGGTCACCCGACCCTGAAAAACCTTTCTCCAACCCCAAGAAGTATTGCTT
CCCCATTGACCCTGGGTTATACCAGTCTTGGAGTCTTCTATGCTCTGCGAAACCCATCAACGCCATTTCCAATACAAATAGGGTGAAAGGGTCTGCCCAG
TAGTTGTATGTTCCGGCGGGGGGAATT